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  1. Bug Repository
  2. BUG-106

Identical file name generates a merged track.

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            To reproduce: Load A thal 2009. Load CoolL1T1.sm.bam from http://transvar.org/illumina/tophat_3_processed/. Load the same file from http://transvar.org/illumina/tophat-1.1.4-heat-drought-processed/

            IGB lists them separately in the 'Load Mode' list.

            Zoom in and refresh - they load into one track, even though the files contain different data and they come from different web addresses.

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                relates to

                Task - A task that needs to be done. BUG-622 File format issues

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13655, Mac, Java 1.06.0_37

                  Tested exact same file names and type:

                  Tested same file name, different file type:

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                  richard Richard Linchangco (Inactive) added a comment - Passed V.13655, Mac, Java 1.06.0_37 Tested exact same file names and type: http://bioviz.org/filerepo/Quickload/A_thaliana_Jun_2009/cold_stress/cold_control.sm.bedgraph.gz http://igbquickload.org/quickload/A_thaliana_Jun_2009/cold_stress/cold_control.sm.bedgraph.gz Tested same file name, different file type: http://igbquickload.org/quickload/A_thaliana_Jun_2009/cold_stress/cold_treatment.sm.bam http://igbquickload.org/quickload/A_thaliana_Jun_2009/cold_stress/cold_treatment.sm.bedgraph.gz
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                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13621, Mac, Java 1.06.0_37
                  Tested same file types, different file types.

                  Show
                  richard Richard Linchangco (Inactive) added a comment - Passed V.13621, Mac, Java 1.06.0_37 Tested same file types, different file types.
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                  smylapur Vineeth Mylapur (Inactive) added a comment -

                  Passed 7.0 (11923) on windows

                  Show
                  smylapur Vineeth Mylapur (Inactive) added a comment - Passed 7.0 (11923) on windows
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                  kkubiak Katharine Kubiak (Inactive) added a comment - - edited

                  You can use BA2.sm.bam from http://www.igbquickload.org/cyto/A_thaliana_Jun_2009/ngs/cyto_processed/ and from http://www.igbquickload.org/cyto/A_thaliana_Jun_2009/ngs/tophat_4_processed/?C=S;O=A

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - - edited You can use BA2.sm.bam from http://www.igbquickload.org/cyto/A_thaliana_Jun_2009/ngs/cyto_processed/ and from http://www.igbquickload.org/cyto/A_thaliana_Jun_2009/ngs/tophat_4_processed/?C=S;O=A
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                  smylapur Vineeth Mylapur (Inactive) added a comment -

                  Second link is not working.

                  Show
                  smylapur Vineeth Mylapur (Inactive) added a comment - Second link is not working.
                  7 older comments

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: