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  1. Bug Repository
  2. BUG-109

Property search NPE

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None
          • Environment:

            Description

            Property search causes an error:

            To repeat:

            Launch IGB.
            Choose a genome.
            Click Search tab.
            Choose "Properties" in "genome" and enter + search string. Click Search.

            Observe the console reports a NullPointerException:

            [java] Exception in thread "pool-10-thread-1" java.lang.NullPointerException
            [java] at java.lang.String.compareTo(String.java:1167)
            [java] at com.affymetrix.igb.search.SearchView$3$1.compare(SearchView.java:503)
            [java] at com.affymetrix.igb.search.SearchView$3$1.compare(SearchView.java:501)
            [java] at java.util.Arrays.mergeSort(Arrays.java:1270)
            [java] at java.util.Arrays.mergeSort(Arrays.java:1282)
            [java] at java.util.Arrays.mergeSort(Arrays.java:1282)
            [java] at java.util.Arrays.mergeSort(Arrays.java:1282)
            [java] at java.util.Arrays.mergeSort(Arrays.java:1281)
            [java] at java.util.Arrays.mergeSort(Arrays.java:1282)
            [java] at java.util.Arrays.mergeSort(Arrays.java:1282)
            [java] at java.util.Arrays.mergeSort(Arrays.java:1281)
            [java] at java.util.Arrays.mergeSort(Arrays.java:1282)
            [java] at java.util.Arrays.mergeSort(Arrays.java:1282)
            [java] at java.util.Arrays.mergeSort(Arrays.java:1282)
            [java] at java.util.Arrays.mergeSort(Arrays.java:1282)
            [java] at java.util.Arrays.sort(Arrays.java:1210)
            [java] at java.util.Collections.sort(Collections.java:159)
            [java] at com.affymetrix.igb.search.SearchView$3.run(SearchView.java:501)
            [java] at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
            [java] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
            [java] at java.lang.Thread.run(Thread.java:680)

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                is blocked by

                Task - A task that needs to be done. BUG-648 Search bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  Hide
                  Permalink
                  tkanapar Tarun Santosh (Inactive) added a comment -

                  Passed (7.0.4) 15381(Mac)

                  Show
                  tkanapar Tarun Santosh (Inactive) added a comment - Passed (7.0.4) 15381(Mac)
                  Hide
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                  smylapur Vineeth Mylapur (Inactive) added a comment -

                  Passed 7.0 (11891) on Windows

                  Show
                  smylapur Vineeth Mylapur (Inactive) added a comment - Passed 7.0 (11891) on Windows
                  Hide
                  Permalink
                  anuj Anuj Puram (Inactive) added a comment -

                  passed 6.7.0 (9824) on Mac

                  Show
                  anuj Anuj Puram (Inactive) added a comment - passed 6.7.0 (9824) on Mac
                  Hide
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed v9804 Windows

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9804 Windows
                  Hide
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                  imnick Nick Ren (Inactive) added a comment - - edited

                  First, I used any genome to test property search. It works well and doesn't show NPE.

                  In addition, I test Bug1. It works. After search on genome, it will give all result.

                  About Bug2, it's not very clear for me. My test result is "the search list will not clear when hopping between different chromosome".

                  I didn't test Bug3 since Hiral said this is not a bug.

                  Show
                  imnick Nick Ren (Inactive) added a comment - - edited First, I used any genome to test property search. It works well and doesn't show NPE. In addition, I test Bug1. It works. After search on genome, it will give all result. About Bug2, it's not very clear for me. My test result is "the search list will not clear when hopping between different chromosome". I didn't test Bug3 since Hiral said this is not a bug.
                  Hide
                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  1 & 2 should be fixed.
                  Third is not a bug.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - 1 & 2 should be fixed. Third is not a bug.
                  Hide
                  Permalink
                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited

                  [search bugs moved to an independent bug report.]

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited [search bugs moved to an independent bug report.]
                  Hide
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed.

                  While checking this also make sure that search is not broken and it still returns results as expected.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed. While checking this also make sure that search is not broken and it still returns results as expected.

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      ann.loraine Ann Loraine
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                      Dates

                      • Created:
                        Updated:
                        Resolved: