Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Minor
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Resolution: Fixed
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Labels:None
Description
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at java.util.Arrays.binarySearch(Arrays.java:1417)
at com.affymetrix.genometryImpl.GraphSym.determineBegIndex(GraphSym.java:325)
at com.affymetrix.genometryImpl.GraphSym.getYCoordFromX(GraphSym.java:382)
at com.affymetrix.genometryImpl.GraphSym.getLocationProperties(GraphSym.java:519)
at com.affymetrix.igb.property.PropertyView.getGraphPropertiesRowColumn(PropertyView.java:400)
at com.affymetrix.igb.view.SeqMapView.setToolTip(SeqMapView.java:1946)
at com.affymetrix.igb.view.SeqMapViewMouseListener.mouseMoved(SeqMapViewMouseListener.java:173)
at com.affymetrix.genoviz.widget.NeoWidget.heardMouseEvent(NeoWidget.java:1280)
at com.affymetrix.genoviz.widget.NeoMap.heardMouseEvent(NeoMap.java:1539)
at com.affymetrix.genoviz.widget.NeoAbstractWidget.mouseMoved(NeoAbstractWidget.java:819)
at com.affymetrix.genoviz.bioviews.View.heardMouseEvent(View.java:926)
at com.affymetrix.genoviz.bioviews.View.mouseMoved(View.java:846)
at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312)
at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312)
at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312)
at java.awt.Component.processMouseMotionEvent(Component.java:6419)
at javax.swing.JComponent.processMouseMotionEvent(JComponent.java:3285)
at java.awt.Component.processEvent(Component.java:6143)
at java.awt.Container.processEvent(Container.java:2085)
at java.awt.Component.dispatchEventImpl(Component.java:4736)
at java.awt.Container.dispatchEventImpl(Container.java:2143)
at java.awt.Component.dispatchEvent(Component.java:4566)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4295)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
at java.awt.Container.dispatchEventImpl(Container.java:2129)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4566)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:680)
at java.awt.EventQueue.access$000(EventQueue.java:86)
at java.awt.EventQueue$1.run(EventQueue.java:639)
at java.awt.EventQueue$1.run(EventQueue.java:637)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
at java.awt.EventQueue$2.run(EventQueue.java:653)
at java.awt.EventQueue$2.run(EventQueue.java:651)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:650)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
java.lang.ArrayIndexOutOfBoundsException: 170625
at com.affymetrix.genometryImpl.SeqSymSummarizer.getMismatchGraph(SeqSymSummarizer.java:89)
at com.affymetrix.igb.view.DependentData.createMisMatchGraph(DependentData.java:85)
at com.affymetrix.igb.view.DependentData.createTier(DependentData.java:55)
at com.affymetrix.igb.view.TrackView.updateDependentData(TrackView.java:288)
at com.affymetrix.igb.view.load.GeneralLoadUtils$2.runInBackground(GeneralLoadUtils.java:778)
at com.affymetrix.genometryImpl.thread.CThreadWorker.doInBackground(CThreadWorker.java:38)
at javax.swing.SwingWorker$1.call(SwingWorker.java:277)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at javax.swing.SwingWorker.run(SwingWorker.java:316)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:680)
Attachments
Issue Links
- is blocked by
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BUG-638 Graph files
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- Closed
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Activity
Field | Original Value | New Value |
---|---|---|
Description |
xception in thread "AWT-EventQueue-0" java.lang.NullPointerException at java.util.Arrays.binarySearch(Arrays.java:1417) at com.affymetrix.genometryImpl.GraphSym.determineBegIndex(GraphSym.java:325) at com.affymetrix.genometryImpl.GraphSym.getYCoordFromX(GraphSym.java:382) at com.affymetrix.genometryImpl.GraphSym.getLocationProperties(GraphSym.java:519) at com.affymetrix.igb.property.PropertyView.getGraphPropertiesRowColumn(PropertyView.java:400) at com.affymetrix.igb.view.SeqMapView.setToolTip(SeqMapView.java:1946) at com.affymetrix.igb.view.SeqMapViewMouseListener.mouseMoved(SeqMapViewMouseListener.java:173) at com.affymetrix.genoviz.widget.NeoWidget.heardMouseEvent(NeoWidget.java:1280) at com.affymetrix.genoviz.widget.NeoMap.heardMouseEvent(NeoMap.java:1539) at com.affymetrix.genoviz.widget.NeoAbstractWidget.mouseMoved(NeoAbstractWidget.java:819) at com.affymetrix.genoviz.bioviews.View.heardMouseEvent(View.java:926) at com.affymetrix.genoviz.bioviews.View.mouseMoved(View.java:846) at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312) at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312) at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312) at java.awt.Component.processMouseMotionEvent(Component.java:6419) at javax.swing.JComponent.processMouseMotionEvent(JComponent.java:3285) at java.awt.Component.processEvent(Component.java:6143) at java.awt.Container.processEvent(Container.java:2085) at java.awt.Component.dispatchEventImpl(Component.java:4736) at java.awt.Container.dispatchEventImpl(Container.java:2143) at java.awt.Component.dispatchEvent(Component.java:4566) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4295) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212) at java.awt.Container.dispatchEventImpl(Container.java:2129) at java.awt.Window.dispatchEventImpl(Window.java:2478) at java.awt.Component.dispatchEvent(Component.java:4566) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:680) at java.awt.EventQueue.access$000(EventQueue.java:86) at java.awt.EventQueue$1.run(EventQueue.java:639) at java.awt.EventQueue$1.run(EventQueue.java:637) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) at java.awt.EventQueue$2.run(EventQueue.java:653) at java.awt.EventQueue$2.run(EventQueue.java:651) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.awt.EventQueue.dispatchEvent(EventQueue.java:650) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) java.lang.ArrayIndexOutOfBoundsException: 170625 at com.affymetrix.genometryImpl.SeqSymSummarizer.getMismatchGraph(SeqSymSummarizer.java:89) at com.affymetrix.igb.view.DependentData.createMisMatchGraph(DependentData.java:85) at com.affymetrix.igb.view.DependentData.createTier(DependentData.java:55) at com.affymetrix.igb.view.TrackView.updateDependentData(TrackView.java:288) at com.affymetrix.igb.view.load.GeneralLoadUtils$2.runInBackground(GeneralLoadUtils.java:778) at com.affymetrix.genometryImpl.thread.CThreadWorker.doInBackground(CThreadWorker.java:38) at javax.swing.SwingWorker$1.call(SwingWorker.java:277) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at javax.swing.SwingWorker.run(SwingWorker.java:316) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:680) |
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException at java.util.Arrays.binarySearch(Arrays.java:1417) at com.affymetrix.genometryImpl.GraphSym.determineBegIndex(GraphSym.java:325) at com.affymetrix.genometryImpl.GraphSym.getYCoordFromX(GraphSym.java:382) at com.affymetrix.genometryImpl.GraphSym.getLocationProperties(GraphSym.java:519) at com.affymetrix.igb.property.PropertyView.getGraphPropertiesRowColumn(PropertyView.java:400) at com.affymetrix.igb.view.SeqMapView.setToolTip(SeqMapView.java:1946) at com.affymetrix.igb.view.SeqMapViewMouseListener.mouseMoved(SeqMapViewMouseListener.java:173) at com.affymetrix.genoviz.widget.NeoWidget.heardMouseEvent(NeoWidget.java:1280) at com.affymetrix.genoviz.widget.NeoMap.heardMouseEvent(NeoMap.java:1539) at com.affymetrix.genoviz.widget.NeoAbstractWidget.mouseMoved(NeoAbstractWidget.java:819) at com.affymetrix.genoviz.bioviews.View.heardMouseEvent(View.java:926) at com.affymetrix.genoviz.bioviews.View.mouseMoved(View.java:846) at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312) at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312) at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312) at java.awt.Component.processMouseMotionEvent(Component.java:6419) at javax.swing.JComponent.processMouseMotionEvent(JComponent.java:3285) at java.awt.Component.processEvent(Component.java:6143) at java.awt.Container.processEvent(Container.java:2085) at java.awt.Component.dispatchEventImpl(Component.java:4736) at java.awt.Container.dispatchEventImpl(Container.java:2143) at java.awt.Component.dispatchEvent(Component.java:4566) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4295) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212) at java.awt.Container.dispatchEventImpl(Container.java:2129) at java.awt.Window.dispatchEventImpl(Window.java:2478) at java.awt.Component.dispatchEvent(Component.java:4566) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:680) at java.awt.EventQueue.access$000(EventQueue.java:86) at java.awt.EventQueue$1.run(EventQueue.java:639) at java.awt.EventQueue$1.run(EventQueue.java:637) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) at java.awt.EventQueue$2.run(EventQueue.java:653) at java.awt.EventQueue$2.run(EventQueue.java:651) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.awt.EventQueue.dispatchEvent(EventQueue.java:650) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) java.lang.ArrayIndexOutOfBoundsException: 170625 at com.affymetrix.genometryImpl.SeqSymSummarizer.getMismatchGraph(SeqSymSummarizer.java:89) at com.affymetrix.igb.view.DependentData.createMisMatchGraph(DependentData.java:85) at com.affymetrix.igb.view.DependentData.createTier(DependentData.java:55) at com.affymetrix.igb.view.TrackView.updateDependentData(TrackView.java:288) at com.affymetrix.igb.view.load.GeneralLoadUtils$2.runInBackground(GeneralLoadUtils.java:778) at com.affymetrix.genometryImpl.thread.CThreadWorker.doInBackground(CThreadWorker.java:38) at javax.swing.SwingWorker$1.call(SwingWorker.java:277) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at javax.swing.SwingWorker.run(SwingWorker.java:316) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:680) |
Assignee | Hiral Vora [ hiralv ] | Alyssa Gulledge [ alyssa ] |
Status | Open [ 1 ] | Resolved [ 5 ] |
Resolution | Fixed [ 1 ] |
Status | Resolved [ 5 ] | Closed [ 6 ] |
Resolution | Fixed [ 1 ] | |
Status | Closed [ 6 ] | Reopened [ 4 ] |
Assignee | Alyssa Gulledge [ alyssa ] |
Status | Reopened [ 4 ] | Resolved [ 5 ] |
Resolution | Fixed [ 1 ] |
Status | Resolved [ 5 ] | Closed [ 6 ] |
Resolution | Fixed [ 1 ] | |
Status | Closed [ 6 ] | Reopened [ 4 ] |
Assignee | Katharine Kubiak [ kkubiak ] |
Assignee | Katharine Kubiak [ kkubiak ] | Anuj Puram [ anuj ] |
Assignee | Anuj Puram [ anuj ] | Alyssa Gulledge [ alyssa ] |
Status | Reopened [ 4 ] | Resolved [ 5 ] |
Assignee | Alyssa Gulledge [ alyssa ] | |
Resolution | Fixed [ 1 ] |
Status | Resolved [ 5 ] | Closed [ 6 ] |
Resolution | Fixed [ 1 ] | |
Status | Closed [ 6 ] | Reopened [ 4 ] |
Assignee | Vineeth Mylapur [ smylapur ] |
Status | Reopened [ 4 ] | Resolved [ 5 ] |
Assignee | Vineeth Mylapur [ smylapur ] | |
Resolution | Fixed [ 1 ] |
Resolution | Fixed [ 1 ] | |
Status | Resolved [ 5 ] | Reopened [ 4 ] |
Status | Reopened [ 4 ] | Resolved [ 5 ] |
Assignee | Alyssa Gulledge [ alyssa ] | |
Resolution | Fixed [ 1 ] |
Status | Resolved [ 5 ] | Closed [ 6 ] |
Assignee | Alyssa Gulledge [ alyssa ] |