Uploaded image for project: 'Bug Repository'
  1. Bug Repository
  2. BUG-114

Exception while displaying graph properties in tooltip

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Minor
    • Resolution: Fixed
    • Labels:
      None

      Description

      Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
      at java.util.Arrays.binarySearch(Arrays.java:1417)
      at com.affymetrix.genometryImpl.GraphSym.determineBegIndex(GraphSym.java:325)
      at com.affymetrix.genometryImpl.GraphSym.getYCoordFromX(GraphSym.java:382)
      at com.affymetrix.genometryImpl.GraphSym.getLocationProperties(GraphSym.java:519)
      at com.affymetrix.igb.property.PropertyView.getGraphPropertiesRowColumn(PropertyView.java:400)
      at com.affymetrix.igb.view.SeqMapView.setToolTip(SeqMapView.java:1946)
      at com.affymetrix.igb.view.SeqMapViewMouseListener.mouseMoved(SeqMapViewMouseListener.java:173)
      at com.affymetrix.genoviz.widget.NeoWidget.heardMouseEvent(NeoWidget.java:1280)
      at com.affymetrix.genoviz.widget.NeoMap.heardMouseEvent(NeoMap.java:1539)
      at com.affymetrix.genoviz.widget.NeoAbstractWidget.mouseMoved(NeoAbstractWidget.java:819)
      at com.affymetrix.genoviz.bioviews.View.heardMouseEvent(View.java:926)
      at com.affymetrix.genoviz.bioviews.View.mouseMoved(View.java:846)
      at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312)
      at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312)
      at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312)
      at java.awt.Component.processMouseMotionEvent(Component.java:6419)
      at javax.swing.JComponent.processMouseMotionEvent(JComponent.java:3285)
      at java.awt.Component.processEvent(Component.java:6143)
      at java.awt.Container.processEvent(Container.java:2085)
      at java.awt.Component.dispatchEventImpl(Component.java:4736)
      at java.awt.Container.dispatchEventImpl(Container.java:2143)
      at java.awt.Component.dispatchEvent(Component.java:4566)
      at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
      at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4295)
      at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
      at java.awt.Container.dispatchEventImpl(Container.java:2129)
      at java.awt.Window.dispatchEventImpl(Window.java:2478)
      at java.awt.Component.dispatchEvent(Component.java:4566)
      at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:680)
      at java.awt.EventQueue.access$000(EventQueue.java:86)
      at java.awt.EventQueue$1.run(EventQueue.java:639)
      at java.awt.EventQueue$1.run(EventQueue.java:637)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
      at java.awt.EventQueue$2.run(EventQueue.java:653)
      at java.awt.EventQueue$2.run(EventQueue.java:651)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
      at java.awt.EventQueue.dispatchEvent(EventQueue.java:650)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
      at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
      at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
      java.lang.ArrayIndexOutOfBoundsException: 170625
      at com.affymetrix.genometryImpl.SeqSymSummarizer.getMismatchGraph(SeqSymSummarizer.java:89)
      at com.affymetrix.igb.view.DependentData.createMisMatchGraph(DependentData.java:85)
      at com.affymetrix.igb.view.DependentData.createTier(DependentData.java:55)
      at com.affymetrix.igb.view.TrackView.updateDependentData(TrackView.java:288)
      at com.affymetrix.igb.view.load.GeneralLoadUtils$2.runInBackground(GeneralLoadUtils.java:778)
      at com.affymetrix.genometryImpl.thread.CThreadWorker.doInBackground(CThreadWorker.java:38)
      at javax.swing.SwingWorker$1.call(SwingWorker.java:277)
      at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
      at java.util.concurrent.FutureTask.run(FutureTask.java:138)
      at javax.swing.SwingWorker.run(SwingWorker.java:316)
      at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
      at java.lang.Thread.run(Thread.java:680)

        Attachments

          Issue Links

            Activity

            lfrohman Lance Frohman (Inactive) created issue -
            hiralv Hiral Vora (Inactive) made changes -
            Field Original Value New Value
            Description xception in thread "AWT-EventQueue-0" java.lang.NullPointerException
            at java.util.Arrays.binarySearch(Arrays.java:1417)
            at com.affymetrix.genometryImpl.GraphSym.determineBegIndex(GraphSym.java:325)
            at com.affymetrix.genometryImpl.GraphSym.getYCoordFromX(GraphSym.java:382)
            at com.affymetrix.genometryImpl.GraphSym.getLocationProperties(GraphSym.java:519)
            at com.affymetrix.igb.property.PropertyView.getGraphPropertiesRowColumn(PropertyView.java:400)
            at com.affymetrix.igb.view.SeqMapView.setToolTip(SeqMapView.java:1946)
            at com.affymetrix.igb.view.SeqMapViewMouseListener.mouseMoved(SeqMapViewMouseListener.java:173)
            at com.affymetrix.genoviz.widget.NeoWidget.heardMouseEvent(NeoWidget.java:1280)
            at com.affymetrix.genoviz.widget.NeoMap.heardMouseEvent(NeoMap.java:1539)
            at com.affymetrix.genoviz.widget.NeoAbstractWidget.mouseMoved(NeoAbstractWidget.java:819)
            at com.affymetrix.genoviz.bioviews.View.heardMouseEvent(View.java:926)
            at com.affymetrix.genoviz.bioviews.View.mouseMoved(View.java:846)
            at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312)
            at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312)
            at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312)
            at java.awt.Component.processMouseMotionEvent(Component.java:6419)
            at javax.swing.JComponent.processMouseMotionEvent(JComponent.java:3285)
            at java.awt.Component.processEvent(Component.java:6143)
            at java.awt.Container.processEvent(Container.java:2085)
            at java.awt.Component.dispatchEventImpl(Component.java:4736)
            at java.awt.Container.dispatchEventImpl(Container.java:2143)
            at java.awt.Component.dispatchEvent(Component.java:4566)
            at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
            at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4295)
            at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
            at java.awt.Container.dispatchEventImpl(Container.java:2129)
            at java.awt.Window.dispatchEventImpl(Window.java:2478)
            at java.awt.Component.dispatchEvent(Component.java:4566)
            at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:680)
            at java.awt.EventQueue.access$000(EventQueue.java:86)
            at java.awt.EventQueue$1.run(EventQueue.java:639)
            at java.awt.EventQueue$1.run(EventQueue.java:637)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
            at java.awt.EventQueue$2.run(EventQueue.java:653)
            at java.awt.EventQueue$2.run(EventQueue.java:651)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.awt.EventQueue.dispatchEvent(EventQueue.java:650)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
            at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
            java.lang.ArrayIndexOutOfBoundsException: 170625
            at com.affymetrix.genometryImpl.SeqSymSummarizer.getMismatchGraph(SeqSymSummarizer.java:89)
            at com.affymetrix.igb.view.DependentData.createMisMatchGraph(DependentData.java:85)
            at com.affymetrix.igb.view.DependentData.createTier(DependentData.java:55)
            at com.affymetrix.igb.view.TrackView.updateDependentData(TrackView.java:288)
            at com.affymetrix.igb.view.load.GeneralLoadUtils$2.runInBackground(GeneralLoadUtils.java:778)
            at com.affymetrix.genometryImpl.thread.CThreadWorker.doInBackground(CThreadWorker.java:38)
            at javax.swing.SwingWorker$1.call(SwingWorker.java:277)
            at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
            at java.util.concurrent.FutureTask.run(FutureTask.java:138)
            at javax.swing.SwingWorker.run(SwingWorker.java:316)
            at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
            at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
            at java.lang.Thread.run(Thread.java:680)
            Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
            at java.util.Arrays.binarySearch(Arrays.java:1417)
            at com.affymetrix.genometryImpl.GraphSym.determineBegIndex(GraphSym.java:325)
            at com.affymetrix.genometryImpl.GraphSym.getYCoordFromX(GraphSym.java:382)
            at com.affymetrix.genometryImpl.GraphSym.getLocationProperties(GraphSym.java:519)
            at com.affymetrix.igb.property.PropertyView.getGraphPropertiesRowColumn(PropertyView.java:400)
            at com.affymetrix.igb.view.SeqMapView.setToolTip(SeqMapView.java:1946)
            at com.affymetrix.igb.view.SeqMapViewMouseListener.mouseMoved(SeqMapViewMouseListener.java:173)
            at com.affymetrix.genoviz.widget.NeoWidget.heardMouseEvent(NeoWidget.java:1280)
            at com.affymetrix.genoviz.widget.NeoMap.heardMouseEvent(NeoMap.java:1539)
            at com.affymetrix.genoviz.widget.NeoAbstractWidget.mouseMoved(NeoAbstractWidget.java:819)
            at com.affymetrix.genoviz.bioviews.View.heardMouseEvent(View.java:926)
            at com.affymetrix.genoviz.bioviews.View.mouseMoved(View.java:846)
            at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312)
            at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312)
            at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312)
            at java.awt.Component.processMouseMotionEvent(Component.java:6419)
            at javax.swing.JComponent.processMouseMotionEvent(JComponent.java:3285)
            at java.awt.Component.processEvent(Component.java:6143)
            at java.awt.Container.processEvent(Container.java:2085)
            at java.awt.Component.dispatchEventImpl(Component.java:4736)
            at java.awt.Container.dispatchEventImpl(Container.java:2143)
            at java.awt.Component.dispatchEvent(Component.java:4566)
            at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
            at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4295)
            at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
            at java.awt.Container.dispatchEventImpl(Container.java:2129)
            at java.awt.Window.dispatchEventImpl(Window.java:2478)
            at java.awt.Component.dispatchEvent(Component.java:4566)
            at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:680)
            at java.awt.EventQueue.access$000(EventQueue.java:86)
            at java.awt.EventQueue$1.run(EventQueue.java:639)
            at java.awt.EventQueue$1.run(EventQueue.java:637)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
            at java.awt.EventQueue$2.run(EventQueue.java:653)
            at java.awt.EventQueue$2.run(EventQueue.java:651)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.awt.EventQueue.dispatchEvent(EventQueue.java:650)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
            at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
            java.lang.ArrayIndexOutOfBoundsException: 170625
            at com.affymetrix.genometryImpl.SeqSymSummarizer.getMismatchGraph(SeqSymSummarizer.java:89)
            at com.affymetrix.igb.view.DependentData.createMisMatchGraph(DependentData.java:85)
            at com.affymetrix.igb.view.DependentData.createTier(DependentData.java:55)
            at com.affymetrix.igb.view.TrackView.updateDependentData(TrackView.java:288)
            at com.affymetrix.igb.view.load.GeneralLoadUtils$2.runInBackground(GeneralLoadUtils.java:778)
            at com.affymetrix.genometryImpl.thread.CThreadWorker.doInBackground(CThreadWorker.java:38)
            at javax.swing.SwingWorker$1.call(SwingWorker.java:277)
            at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
            at java.util.concurrent.FutureTask.run(FutureTask.java:138)
            at javax.swing.SwingWorker.run(SwingWorker.java:316)
            at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
            at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
            at java.lang.Thread.run(Thread.java:680)
            hiralv Hiral Vora (Inactive) made changes -
            Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Open [ 1 ] Resolved [ 5 ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Project IGB6.6 [ 10021 ] Bug Repository [ 10030 ]
            Key IGBA-106 BUG-114
            alyssa Alyssa Gulledge (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            david David Norris (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ]
            david David Norris (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Resolution Fixed [ 1 ]
            david David Norris (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Katharine Kubiak [ kkubiak ]
            kkubiak Katharine Kubiak (Inactive) made changes -
            Assignee Katharine Kubiak [ kkubiak ] Anuj Puram [ anuj ]
            anuj Anuj Puram (Inactive) made changes -
            Assignee Anuj Puram [ anuj ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            smylapur Vineeth Mylapur (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Vineeth Mylapur [ smylapur ]
            smylapur Vineeth Mylapur (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Vineeth Mylapur [ smylapur ]
            Resolution Fixed [ 1 ]
            richard Richard Linchangco (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Resolved [ 5 ] Reopened [ 4 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue is blocked by BUG-638 [ BUG-638 ]
            richard Richard Linchangco (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            Assignee Alyssa Gulledge [ alyssa ]

              People

              • Assignee:
                Unassigned
                Reporter:
                lfrohman Lance Frohman (Inactive)
              • Votes:
                0 Vote for this issue
                Watchers:
                0 Start watching this issue

                Dates

                • Created:
                  Updated:
                  Resolved: