Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      Homo sapiens H_Sapiens_Feb_2009
      (loads ref seq automatically)
      File > Open File... gsnap.4.bam
      Map range box > chr21:22333333-22999999
      Load Data
      Load Sequence in View
      right click gsnap.3
      Make Mismatch Pileup Graph
      there are two groups of data on the very left and the very right
      zoom in on the left data to see detail, everything looks OK
      now zoom in on the right data, it shows all the positions as mismatches
      which is wrong (you can use a regular mismatch graph to compare).

      File is found here: http://transvar.org/~hvora1/

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            alyssa Alyssa Gulledge (Inactive) created issue -
            alyssa Alyssa Gulledge (Inactive) made changes -
            Field Original Value New Value
            Status Open [ 1 ] In Progress [ 3 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status In Progress [ 3 ] Resolved [ 5 ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Project IGB6.6 [ 10021 ] Bug Repository [ 10030 ]
            Key IGBA-164 BUG-139
            alyssa Alyssa Gulledge (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Katharine Kubiak [ kkubiak ]
            Hide
            kkubiak Katharine Kubiak (Inactive) added a comment -

            Passed v9871 Windows

            Show
            kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9871 Windows
            kkubiak Katharine Kubiak (Inactive) made changes -
            Assignee Katharine Kubiak [ kkubiak ] Anuj Puram [ anuj ]
            Hide
            anuj Anuj Puram (Inactive) added a comment -

            Passed v9906 on Mac

            Show
            anuj Anuj Puram (Inactive) added a comment - Passed v9906 on Mac
            anuj Anuj Puram (Inactive) made changes -
            Assignee Anuj Puram [ anuj ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            smylapur Vineeth Mylapur (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Vineeth Mylapur [ smylapur ]
            Hide
            smylapur Vineeth Mylapur (Inactive) added a comment -

            Passed 7.0 (11928) on windows.

            Show
            smylapur Vineeth Mylapur (Inactive) added a comment - Passed 7.0 (11928) on windows.
            smylapur Vineeth Mylapur (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Vineeth Mylapur [ smylapur ]
            Resolution Fixed [ 1 ]
            richard Richard Linchangco (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Resolved [ 5 ] Reopened [ 4 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue is blocked by BUG-639 [ BUG-639 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Reopened [ 4 ] Closed [ 6 ]
            Resolution Fixed [ 1 ]

              People

              • Assignee:
                Unassigned
                Reporter:
                alyssa Alyssa Gulledge (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: