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  1. Bug Repository
  2. BUG-146

Exception when trying to change load mode of 'no data loaded' files IF they are set to whole genome

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      To generate this exception, load the test gff into igb (from desktop), notice chr22 in current sequences. Load the test wig file (again from desktop). Set the wig to 'whole chromosome'. Wait for igb to respod and 'gray out' the load data buttons. Notice that there is now a chrblah in current sequences. Now, click on the 'load mode' for the wig file in the load mode table. It will throw an exception (see below). Also, the track does NOT show the 'warning' symbol, although the track name says data not loaded. Select the chrblah in current seq, data appears, but a similar thing happens to the gff file - it says data not loaded, with no symbol, and if you try to click on load mode, you get the exception.

      Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
      at com.affymetrix.igb.view.load.LoadModeTable$ColumnRenderer.getTableCellRendererComponent(LoadModeTable.java:167)
      at javax.swing.JTable$AccessibleJTable.getAccessibleChild(JTable.java:7023)
      at javax.swing.JTable$AccessibleJTable.getAccessibleAt(JTable.java:7410)
      at javax.swing.JTable$AccessibleJTable.valueChanged(JTable.java:6925)
      at javax.swing.DefaultListSelectionModel.fireValueChanged(DefaultListSelectionModel.java:167)
      at javax.swing.DefaultListSelectionModel.fireValueChanged(DefaultListSelectionModel.java:147)
      at javax.swing.DefaultListSelectionModel.fireValueChanged(DefaultListSelectionModel.java:194)
      at javax.swing.DefaultListSelectionModel.changeSelection(DefaultListSelectionModel.java:388)
      at javax.swing.DefaultListSelectionModel.changeSelection(DefaultListSelectionModel.java:398)
      at javax.swing.DefaultListSelectionModel.setSelectionInterval(DefaultListSelectionModel.java:442)
      at javax.swing.JTable.changeSelectionModel(JTable.java:2352)
      at javax.swing.JTable.changeSelection(JTable.java:2421)
      at javax.swing.plaf.basic.BasicTableUI$Handler.adjustSelection(BasicTableUI.java:1085)
      at javax.swing.plaf.basic.BasicTableUI$Handler.mousePressed(BasicTableUI.java:1008)
      at javax.swing.plaf.basic.BasicTableUI$MouseInputHandler.mousePressed(BasicTableUI.java:768)
      at com.apple.laf.AquaTableUI$MouseInputHandler.mousePressed(AquaTableUI.java:82)
      at java.awt.AWTEventMulticaster.mousePressed(AWTEventMulticaster.java:263)
      at java.awt.Component.processMouseEvent(Component.java:6349)
      at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
      at java.awt.Component.processEvent(Component.java:6117)
      at java.awt.Container.processEvent(Container.java:2085)
      at java.awt.Component.dispatchEventImpl(Component.java:4714)
      at java.awt.Container.dispatchEventImpl(Container.java:2143)
      at java.awt.Component.dispatchEvent(Component.java:4544)
      at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
      at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4279)
      at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
      at java.awt.Container.dispatchEventImpl(Container.java:2129)
      at java.awt.Window.dispatchEventImpl(Window.java:2478)
      at java.awt.Component.dispatchEvent(Component.java:4544)
      at java.awt.EventQueue.dispatchEvent(EventQueue.java:635)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
      at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
      at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
      Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
      at com.affymetrix.igb.view.load.LoadModeTable$ColumnRenderer.getTableCellRendererComponent(LoadModeTable.java:167)
      at javax.swing.JTable$AccessibleJTable.getAccessibleChild(JTable.java:7023)
      at javax.swing.JTable$AccessibleJTable.getAccessibleAt(JTable.java:7410)
      at javax.swing.JTable$AccessibleJTable.valueChanged(JTable.java:6925)
      at javax.swing.DefaultListSelectionModel.fireValueChanged(DefaultListSelectionModel.java:167)
      at javax.swing.DefaultListSelectionModel.fireValueChanged(DefaultListSelectionModel.java:137)
      at javax.swing.DefaultListSelectionModel.setValueIsAdjusting(DefaultListSelectionModel.java:668)
      at javax.swing.plaf.basic.BasicTableUI$Handler.setValueIsAdjusting(BasicTableUI.java:923)
      at javax.swing.plaf.basic.BasicTableUI$Handler.mouseReleased(BasicTableUI.java:1136)
      at javax.swing.plaf.basic.BasicTableUI$MouseInputHandler.mouseReleased(BasicTableUI.java:772)
      at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:273)
      at java.awt.Component.processMouseEvent(Component.java:6352)
      at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
      at java.awt.Component.processEvent(Component.java:6117)
      at java.awt.Container.processEvent(Container.java:2085)
      at java.awt.Component.dispatchEventImpl(Component.java:4714)
      at java.awt.Container.dispatchEventImpl(Container.java:2143)
      at java.awt.Component.dispatchEvent(Component.java:4544)
      at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
      at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4282)
      at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
      at java.awt.Container.dispatchEventImpl(Container.java:2129)
      at java.awt.Window.dispatchEventImpl(Window.java:2478)
      at java.awt.Component.dispatchEvent(Component.java:4544)
      at java.awt.EventQueue.dispatchEvent(EventQueue.java:635)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
      at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
      at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

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            alyssa Alyssa Gulledge (Inactive) created issue -
            hiralv Hiral Vora (Inactive) made changes -
            Field Original Value New Value
            Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
            hiralv Hiral Vora (Inactive) made changes -
            Assignee Hiral Vora [ hiralv ] David Norris [ david ]
            david David Norris (Inactive) made changes -
            Assignee David Norris [ david ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Open [ 1 ] Resolved [ 5 ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Project IGB6.6 [ 10021 ] Bug Repository [ 10030 ]
            Key IGBA-171 BUG-146
            alyssa Alyssa Gulledge (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Reopened [ 4 ] Closed [ 6 ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Katharine Kubiak [ kkubiak ]
            kkubiak Katharine Kubiak (Inactive) made changes -
            Assignee Katharine Kubiak [ kkubiak ] Anuj Puram [ anuj ]
            anuj Anuj Puram (Inactive) made changes -
            Assignee Anuj Puram [ anuj ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            smylapur Vineeth Mylapur (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Vineeth Mylapur [ smylapur ]
            smylapur Vineeth Mylapur (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Vineeth Mylapur [ smylapur ]
            Resolution Fixed [ 1 ]
            richard Richard Linchangco (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Resolved [ 5 ] Reopened [ 4 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue relates to BUG-623 [ BUG-623 ]
            richard Richard Linchangco (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            alyssa Alyssa Gulledge (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ] Richard Linchangco [ richard ]
            richard Richard Linchangco (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Resolution Fixed [ 1 ]
            richard Richard Linchangco (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            Assignee Richard Linchangco [ richard ] Alyssa Gulledge [ alyssa ]
            richard Richard Linchangco (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Alyssa Gulledge [ alyssa ]
            richard Richard Linchangco (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Reopened [ 4 ] Closed [ 6 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue relates to BUG-663 [ BUG-663 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue relates to BUG-664 [ BUG-664 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue relates to BUG-664 [ BUG-664 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue relates to BUG-623 [ BUG-623 ]

              People

              • Assignee:
                Unassigned
                Reporter:
                alyssa Alyssa Gulledge (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: