Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Fixed
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Labels:None
Description
To generate this exception, load the test gff into igb (from desktop), notice chr22 in current sequences. Load the test wig file (again from desktop). Set the wig to 'whole chromosome'. Wait for igb to respod and 'gray out' the load data buttons. Notice that there is now a chrblah in current sequences. Now, click on the 'load mode' for the wig file in the load mode table. It will throw an exception (see below). Also, the track does NOT show the 'warning' symbol, although the track name says data not loaded. Select the chrblah in current seq, data appears, but a similar thing happens to the gff file - it says data not loaded, with no symbol, and if you try to click on load mode, you get the exception.
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at com.affymetrix.igb.view.load.LoadModeTable$ColumnRenderer.getTableCellRendererComponent(LoadModeTable.java:167)
at javax.swing.JTable$AccessibleJTable.getAccessibleChild(JTable.java:7023)
at javax.swing.JTable$AccessibleJTable.getAccessibleAt(JTable.java:7410)
at javax.swing.JTable$AccessibleJTable.valueChanged(JTable.java:6925)
at javax.swing.DefaultListSelectionModel.fireValueChanged(DefaultListSelectionModel.java:167)
at javax.swing.DefaultListSelectionModel.fireValueChanged(DefaultListSelectionModel.java:147)
at javax.swing.DefaultListSelectionModel.fireValueChanged(DefaultListSelectionModel.java:194)
at javax.swing.DefaultListSelectionModel.changeSelection(DefaultListSelectionModel.java:388)
at javax.swing.DefaultListSelectionModel.changeSelection(DefaultListSelectionModel.java:398)
at javax.swing.DefaultListSelectionModel.setSelectionInterval(DefaultListSelectionModel.java:442)
at javax.swing.JTable.changeSelectionModel(JTable.java:2352)
at javax.swing.JTable.changeSelection(JTable.java:2421)
at javax.swing.plaf.basic.BasicTableUI$Handler.adjustSelection(BasicTableUI.java:1085)
at javax.swing.plaf.basic.BasicTableUI$Handler.mousePressed(BasicTableUI.java:1008)
at javax.swing.plaf.basic.BasicTableUI$MouseInputHandler.mousePressed(BasicTableUI.java:768)
at com.apple.laf.AquaTableUI$MouseInputHandler.mousePressed(AquaTableUI.java:82)
at java.awt.AWTEventMulticaster.mousePressed(AWTEventMulticaster.java:263)
at java.awt.Component.processMouseEvent(Component.java:6349)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
at java.awt.Component.processEvent(Component.java:6117)
at java.awt.Container.processEvent(Container.java:2085)
at java.awt.Component.dispatchEventImpl(Component.java:4714)
at java.awt.Container.dispatchEventImpl(Container.java:2143)
at java.awt.Component.dispatchEvent(Component.java:4544)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4279)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
at java.awt.Container.dispatchEventImpl(Container.java:2129)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4544)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:635)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at com.affymetrix.igb.view.load.LoadModeTable$ColumnRenderer.getTableCellRendererComponent(LoadModeTable.java:167)
at javax.swing.JTable$AccessibleJTable.getAccessibleChild(JTable.java:7023)
at javax.swing.JTable$AccessibleJTable.getAccessibleAt(JTable.java:7410)
at javax.swing.JTable$AccessibleJTable.valueChanged(JTable.java:6925)
at javax.swing.DefaultListSelectionModel.fireValueChanged(DefaultListSelectionModel.java:167)
at javax.swing.DefaultListSelectionModel.fireValueChanged(DefaultListSelectionModel.java:137)
at javax.swing.DefaultListSelectionModel.setValueIsAdjusting(DefaultListSelectionModel.java:668)
at javax.swing.plaf.basic.BasicTableUI$Handler.setValueIsAdjusting(BasicTableUI.java:923)
at javax.swing.plaf.basic.BasicTableUI$Handler.mouseReleased(BasicTableUI.java:1136)
at javax.swing.plaf.basic.BasicTableUI$MouseInputHandler.mouseReleased(BasicTableUI.java:772)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:273)
at java.awt.Component.processMouseEvent(Component.java:6352)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
at java.awt.Component.processEvent(Component.java:6117)
at java.awt.Container.processEvent(Container.java:2085)
at java.awt.Component.dispatchEventImpl(Component.java:4714)
at java.awt.Container.dispatchEventImpl(Container.java:2143)
at java.awt.Component.dispatchEvent(Component.java:4544)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4282)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
at java.awt.Container.dispatchEventImpl(Container.java:2129)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4544)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:635)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Attachments
Issue Links
- relates to
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BUG-663 Load Modes
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- Closed
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Activity
IF data is successfully loaded, and set to whole genome, you get the following error when clicking on 'chose load mode'
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at com.affymetrix.igb.view.load.LoadModeTable$ColumnRenderer.getTableCellRendererComponent(LoadModeTable.java:167)
at javax.swing.JTable$AccessibleJTable.getAccessibleChild(JTable.java:7023)
at javax.swing.JTable$AccessibleJTable.getAccessibleAt(JTable.java:7410)
at javax.swing.JTable$AccessibleJTable.valueChanged(JTable.java:6925)
at javax.swing.DefaultListSelectionModel.fireValueChanged(DefaultListSelectionModel.java:167)
at javax.swing.DefaultListSelectionModel.fireValueChanged(DefaultListSelectionModel.java:137)
at javax.swing.DefaultListSelectionModel.setValueIsAdjusting(DefaultListSelectionModel.java:668)
at javax.swing.plaf.basic.BasicTableUI$Handler.setValueIsAdjusting(BasicTableUI.java:924)
at javax.swing.plaf.basic.BasicTableUI$Handler.mouseReleased(BasicTableUI.java:1136)
at javax.swing.plaf.basic.BasicTableUI$MouseInputHandler.mouseReleased(BasicTableUI.java:772)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:273)
at java.awt.Component.processMouseEvent(Component.java:6352)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
at java.awt.Component.processEvent(Component.java:6117)
at java.awt.Container.processEvent(Container.java:2085)
at java.awt.Component.dispatchEventImpl(Component.java:4714)
at java.awt.Container.dispatchEventImpl(Container.java:2143)
at java.awt.Component.dispatchEvent(Component.java:4544)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4282)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
at java.awt.Container.dispatchEventImpl(Container.java:2129)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4544)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:635)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Passed V.13674, Mac, Java 1.7.0_09
No exceptions when clicking on 'Load Mode' > 'Genome'