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  1. Bug Repository
  2. BUG-178

Quickload file loaded via script does not show up in tree and table

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            Open attached script file in IGB. It loads the data but does not show feature in tree and feature table.

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                Issue Links

                relates to

                Task - A task that needs to be done. BUG-623 File management bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  richard Richard Linchangco (Inactive) added a comment -

                  Opens A_thaliana_Jun_2009 TAIR10 mRNA data and a window appears stating:

                  http://igbquickload.org/quickload/A_thaliana_Jun_2009/nextgen_samples/sample.bam
                  URL provided not found or times out:

                  The file or URL appear to no longer be valid.
                  All that appears in the JTree and 'Data Management Table' is the TAIR10 mRNA and nothing else.

                  Please update the script.igb file for testing or provide a new script.

                  Show
                  richard Richard Linchangco (Inactive) added a comment - Opens A_thaliana_Jun_2009 TAIR10 mRNA data and a window appears stating: http://igbquickload.org/quickload/A_thaliana_Jun_2009/nextgen_samples/sample.bam URL provided not found or times out: The file or URL appear to no longer be valid. All that appears in the JTree and 'Data Management Table' is the TAIR10 mRNA and nothing else. Please update the script.igb file for testing or provide a new script.
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                  smylapur Vineeth Mylapur (Inactive) added a comment - - edited

                  When we load the Script it shows an Error message as "http://igbquickload.org/quickload/A_thaliana_Jun_2009/nextgen_samples/sample.bam
                  URL provided not found or times out: "
                  I think the sample is not there.
                  But it is showing some data Data See the attached document.
                  It is showing the feature in the table.

                  Passed 7.0 (11935) on windows.

                  Show
                  smylapur Vineeth Mylapur (Inactive) added a comment - - edited When we load the Script it shows an Error message as "http://igbquickload.org/quickload/A_thaliana_Jun_2009/nextgen_samples/sample.bam URL provided not found or times out: " I think the sample is not there. But it is showing some data Data See the attached document. It is showing the feature in the table. Passed 7.0 (11935) on windows.
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                  anuj Anuj Puram (Inactive) added a comment -

                  Passed 6.7.0 (9891) on Mac

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                  anuj Anuj Puram (Inactive) added a comment - Passed 6.7.0 (9891) on Mac
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed v9854 Windows

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                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9854 Windows
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Check this on branch.

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                  hiralv Hiral Vora (Inactive) added a comment - Check this on branch.
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r9285.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r9285.

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      hiralv Hiral Vora (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: