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  1. Bug Repository
  2. BUG-18

Sliced view exceptions out

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None
          • Environment:

            OS X: 10.6
            Java: 1.6.0_24
            IGB SVN: 7811

            Description

            On any species, with preferences cleaned, using Sliced View will generate an exception.

            Exception in thread "Thread-9" java.lang.NullPointerException
            at com.affymetrix.igb.view.SeqMapView.zoomToRectangle(SeqMapView.java:1247)
            at com.affymetrix.igb.view.SeqMapView.zoomToGlyphs(SeqMapView.java:1212)
            at com.affymetrix.igb.view.SeqMapView.zoomToSelections(SeqMapView.java:1185)
            at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:692)
            at com.affymetrix.igb.view.AltSpliceSeqMapView.setAnnotatedSeq(AltSpliceSeqMapView.java:253)
            at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:555)
            at com.affymetrix.igb.view.AltSpliceSeqMapView.setAnnotatedSeq(AltSpliceSeqMapView.java:52)
            at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:543)
            at com.affymetrix.igb.view.AltSpliceSeqMapView.sliceAndDiceNow(AltSpliceSeqMapView.java:226)
            at com.affymetrix.igb.view.AltSpliceSeqMapView.access$200(AltSpliceSeqMapView.java:20)
            at com.affymetrix.igb.view.AltSpliceSeqMapView$3.run(AltSpliceSeqMapView.java:113)

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-661 Sliced View

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  fixed

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - fixed
                  Hide
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                  adam Adam Baxter (Inactive) added a comment -

                  Confirmed fixed in svn version 7816.

                  Show
                  adam Adam Baxter (Inactive) added a comment - Confirmed fixed in svn version 7816.
                  Hide
                  Permalink
                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed v9800 Windows

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9800 Windows
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                  anuj Anuj Puram (Inactive) added a comment -

                  Passed 6.7.0(9824) on Mac

                  Show
                  anuj Anuj Puram (Inactive) added a comment - Passed 6.7.0(9824) on Mac
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                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13772, Mac, Java 1.7.0_09

                  No errors or exceptions appeared on Java console when using 'Sliced View' Tab on H_sapiens_Feb_2009 on a freshly reset IGB.

                  Show
                  richard Richard Linchangco (Inactive) added a comment - Passed V.13772, Mac, Java 1.7.0_09 No errors or exceptions appeared on Java console when using 'Sliced View' Tab on H_sapiens_Feb_2009 on a freshly reset IGB.

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      adam Adam Baxter (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: