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  1. Bug Repository
  2. BUG-244

Exception in prefs - ID: 3377599

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            1) run igb
            2) select "Species" (top option) in species CB
            3) open File > Preferences...

            I get the following exception:

            Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: Row i
            ndex out of range
            at javax.swing.JTable.boundRow(Unknown Source)
            at javax.swing.JTable.setRowSelectionInterval(Unknown Source)
            at com.affymetrix.igb.view.TierPrefsView.setSelectedRows(TierPrefsView.j
            ava:120)

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-609 Preferences > Track default, Other Options and general Preferences issues

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  When I tried it (version 8702), I got this one:

                  Completed loading residues for chr21 from NetAffx QuickLoad
                  Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: Row index out of range
                  at javax.swing.JTable.boundRow(JTable.java:2106)
                  at javax.swing.JTable.setRowSelectionInterval(JTable.java:2129)
                  at com.affymetrix.igb.view.TierPrefsView.refreshList(TierPrefsView.java:791)
                  at com.affymetrix.igb.view.TierPrefsView.refresh(TierPrefsView.java:757)
                  at com.affymetrix.igb.prefs.PreferencesPanel.getFrame(PreferencesPanel.java:174)
                  at com.affymetrix.igb.action.PreferencesAction.actionPerformed(PreferencesAction.java:29)
                  at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
                  at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
                  at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
                  at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
                  at javax.swing.AbstractButton.doClick(AbstractButton.java:389)
                  at com.apple.laf.ScreenMenuItem.actionPerformed(ScreenMenuItem.java:95)
                  at java.awt.MenuItem.processActionEvent(MenuItem.java:627)
                  at java.awt.MenuItem.processEvent(MenuItem.java:586)
                  at java.awt.MenuComponent.dispatchEventImpl(MenuComponent.java:317)
                  at java.awt.MenuComponent.dispatchEvent(MenuComponent.java:305)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:638)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
                  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - When I tried it (version 8702), I got this one: Completed loading residues for chr21 from NetAffx QuickLoad Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: Row index out of range at javax.swing.JTable.boundRow(JTable.java:2106) at javax.swing.JTable.setRowSelectionInterval(JTable.java:2129) at com.affymetrix.igb.view.TierPrefsView.refreshList(TierPrefsView.java:791) at com.affymetrix.igb.view.TierPrefsView.refresh(TierPrefsView.java:757) at com.affymetrix.igb.prefs.PreferencesPanel.getFrame(PreferencesPanel.java:174) at com.affymetrix.igb.action.PreferencesAction.actionPerformed(PreferencesAction.java:29) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242) at javax.swing.AbstractButton.doClick(AbstractButton.java:389) at com.apple.laf.ScreenMenuItem.actionPerformed(ScreenMenuItem.java:95) at java.awt.MenuItem.processActionEvent(MenuItem.java:627) at java.awt.MenuItem.processEvent(MenuItem.java:586) at java.awt.MenuComponent.dispatchEventImpl(MenuComponent.java:317) at java.awt.MenuComponent.dispatchEvent(MenuComponent.java:305) at java.awt.EventQueue.dispatchEvent(EventQueue.java:638) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
                  Hide
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                  david David Norris (Inactive) added a comment -

                  Fixed in revision 8715

                  Show
                  david David Norris (Inactive) added a comment - Fixed in revision 8715
                  Hide
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                  david David Norris (Inactive) added a comment -

                  Alyssa, reproducing this bug required another species and genome be loaded before returning to the "Species" selection and opening the preferences panel. Also you will notice I now disable all panel elements when the table is empty to prevent the bug you noticed (which was unique from the bug Lance reported).

                  Show
                  david David Norris (Inactive) added a comment - Alyssa, reproducing this bug required another species and genome be loaded before returning to the "Species" selection and opening the preferences panel. Also you will notice I now disable all panel elements when the table is empty to prevent the bug you noticed (which was unique from the bug Lance reported).
                  Hide
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                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited

                  So now if you load up a species (A thal) when you return to 'species' there are still tracks listed in the panel - and if you click on the color squares for the track still listed, you get this error:

                  Exception in thread "AWT-EventQueue-0" java.lang.NoClassDefFoundError: sun/awt/EmbeddedFrame
                  at com.jidesoft.popup.JidePopup.handleWindowEvent(Unknown Source)
                  at com.jidesoft.popup.JidePopup$15.eventDispatched(Unknown Source)
                  at java.awt.Toolkit$SelectiveAWTEventListener.eventDispatched(Toolkit.java:2366)
                  at java.awt.Toolkit$ToolkitEventMulticaster.eventDispatched(Toolkit.java:2258)
                  at java.awt.Toolkit.notifyAWTEventListeners(Toolkit.java:2216)
                  at java.awt.Component.dispatchEventImpl(Component.java:4633)
                  at java.awt.Container.dispatchEventImpl(Container.java:2143)
                  at java.awt.Window.dispatchEventImpl(Window.java:2478)
                  at java.awt.Component.dispatchEvent(Component.java:4565)
                  at java.awt.KeyboardFocusManager.redispatchEvent(KeyboardFocusManager.java:1850)
                  at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(DefaultKeyboardFocusManager.java:910)
                  at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:592)
                  at java.awt.Component.dispatchEventImpl(Component.java:4607)
                  at java.awt.Container.dispatchEventImpl(Container.java:2143)
                  at java.awt.Window.dispatchEventImpl(Window.java:2478)
                  at java.awt.Component.dispatchEvent(Component.java:4565)
                  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:679)
                  at java.awt.EventQueue.access$000(EventQueue.java:85)
                  at java.awt.EventQueue$1.run(EventQueue.java:638)
                  at java.awt.EventQueue$1.run(EventQueue.java:636)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
                  at java.awt.EventQueue$2.run(EventQueue.java:652)
                  at java.awt.EventQueue$2.run(EventQueue.java:650)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)
                  at java.awt.SentEvent.dispatch(SentEvent.java:55)
                  at java.awt.DefaultKeyboardFocusManager$DefaultKeyboardFocusManagerSentEvent.dispatch(DefaultKeyboardFocusManager.java:183)
                  at java.awt.DefaultKeyboardFocusManager.sendMessage(DefaultKeyboardFocusManager.java:210)
                  at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:660)
                  at java.awt.Component.dispatchEventImpl(Component.java:4607)
                  at java.awt.Container.dispatchEventImpl(Container.java:2143)
                  at java.awt.Window.dispatchEventImpl(Window.java:2478)
                  at java.awt.Component.dispatchEvent(Component.java:4565)
                  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:679)
                  at java.awt.EventQueue.access$000(EventQueue.java:85)
                  at java.awt.EventQueue$1.run(EventQueue.java:638)
                  at java.awt.EventQueue$1.run(EventQueue.java:636)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
                  at java.awt.EventQueue$2.run(EventQueue.java:652)
                  at java.awt.EventQueue$2.run(EventQueue.java:650)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)
                  at java.awt.SequencedEvent.dispatch(SequencedEvent.java:101)
                  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:677)
                  at java.awt.EventQueue.access$000(EventQueue.java:85)
                  at java.awt.EventQueue$1.run(EventQueue.java:638)
                  at java.awt.EventQueue$1.run(EventQueue.java:636)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
                  at java.awt.EventQueue$2.run(EventQueue.java:652)
                  at java.awt.EventQueue$2.run(EventQueue.java:650)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
                  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
                  Caused by: java.lang.ClassNotFoundException: sun.awt.EmbeddedFrame not found by jide [23]
                  at org.apache.felix.framework.BundleWiringImpl.findClassOrResourceByDelegation(BundleWiringImpl.java:1460)
                  at org.apache.felix.framework.BundleWiringImpl.access$400(BundleWiringImpl.java:72)
                  at org.apache.felix.framework.BundleWiringImpl$BundleClassLoader.loadClass(BundleWiringImpl.java:1843)
                  at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
                  ... 67 more

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited So now if you load up a species (A thal) when you return to 'species' there are still tracks listed in the panel - and if you click on the color squares for the track still listed, you get this error: Exception in thread "AWT-EventQueue-0" java.lang.NoClassDefFoundError: sun/awt/EmbeddedFrame at com.jidesoft.popup.JidePopup.handleWindowEvent(Unknown Source) at com.jidesoft.popup.JidePopup$15.eventDispatched(Unknown Source) at java.awt.Toolkit$SelectiveAWTEventListener.eventDispatched(Toolkit.java:2366) at java.awt.Toolkit$ToolkitEventMulticaster.eventDispatched(Toolkit.java:2258) at java.awt.Toolkit.notifyAWTEventListeners(Toolkit.java:2216) at java.awt.Component.dispatchEventImpl(Component.java:4633) at java.awt.Container.dispatchEventImpl(Container.java:2143) at java.awt.Window.dispatchEventImpl(Window.java:2478) at java.awt.Component.dispatchEvent(Component.java:4565) at java.awt.KeyboardFocusManager.redispatchEvent(KeyboardFocusManager.java:1850) at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(DefaultKeyboardFocusManager.java:910) at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:592) at java.awt.Component.dispatchEventImpl(Component.java:4607) at java.awt.Container.dispatchEventImpl(Container.java:2143) at java.awt.Window.dispatchEventImpl(Window.java:2478) at java.awt.Component.dispatchEvent(Component.java:4565) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:679) at java.awt.EventQueue.access$000(EventQueue.java:85) at java.awt.EventQueue$1.run(EventQueue.java:638) at java.awt.EventQueue$1.run(EventQueue.java:636) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) at java.awt.EventQueue$2.run(EventQueue.java:652) at java.awt.EventQueue$2.run(EventQueue.java:650) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.awt.EventQueue.dispatchEvent(EventQueue.java:649) at java.awt.SentEvent.dispatch(SentEvent.java:55) at java.awt.DefaultKeyboardFocusManager$DefaultKeyboardFocusManagerSentEvent.dispatch(DefaultKeyboardFocusManager.java:183) at java.awt.DefaultKeyboardFocusManager.sendMessage(DefaultKeyboardFocusManager.java:210) at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:660) at java.awt.Component.dispatchEventImpl(Component.java:4607) at java.awt.Container.dispatchEventImpl(Container.java:2143) at java.awt.Window.dispatchEventImpl(Window.java:2478) at java.awt.Component.dispatchEvent(Component.java:4565) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:679) at java.awt.EventQueue.access$000(EventQueue.java:85) at java.awt.EventQueue$1.run(EventQueue.java:638) at java.awt.EventQueue$1.run(EventQueue.java:636) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) at java.awt.EventQueue$2.run(EventQueue.java:652) at java.awt.EventQueue$2.run(EventQueue.java:650) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.awt.EventQueue.dispatchEvent(EventQueue.java:649) at java.awt.SequencedEvent.dispatch(SequencedEvent.java:101) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:677) at java.awt.EventQueue.access$000(EventQueue.java:85) at java.awt.EventQueue$1.run(EventQueue.java:638) at java.awt.EventQueue$1.run(EventQueue.java:636) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) at java.awt.EventQueue$2.run(EventQueue.java:652) at java.awt.EventQueue$2.run(EventQueue.java:650) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.awt.EventQueue.dispatchEvent(EventQueue.java:649) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) Caused by: java.lang.ClassNotFoundException: sun.awt.EmbeddedFrame not found by jide [23] at org.apache.felix.framework.BundleWiringImpl.findClassOrResourceByDelegation(BundleWiringImpl.java:1460) at org.apache.felix.framework.BundleWiringImpl.access$400(BundleWiringImpl.java:72) at org.apache.felix.framework.BundleWiringImpl$BundleClassLoader.loadClass(BundleWiringImpl.java:1843) at java.lang.ClassLoader.loadClass(ClassLoader.java:247) ... 67 more
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                  david David Norris (Inactive) added a comment -

                  Cannot reproduce...

                  Show
                  david David Norris (Inactive) added a comment - Cannot reproduce...
                  Hide
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                  david David Norris (Inactive) added a comment -

                  I did find another NPE in the process of trying to reproduce this though ... it is fixed in r9830.

                  Show
                  david David Norris (Inactive) added a comment - I did find another NPE in the process of trying to reproduce this though ... it is fixed in r9830.
                  Hide
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                  fwang4 Fuquan Wang (Inactive) added a comment -

                  Getting a error box for 7.0.0 (11884) Mac:

                  Error
                  java.lang.IndexOutOfBoundsException: Index: 1, Size: 1
                  See console output for more details about this error.

                  Console:
                  ERROR: Error
                  java.lang.IndexOutOfBoundsException: Index: 1, Size: 1
                  java.lang.IndexOutOfBoundsException: Index: 1, Size: 1
                  at java.util.ArrayList.RangeCheck(ArrayList.java:547)
                  at java.util.ArrayList.get(ArrayList.java:322)
                  at com.affymetrix.igb.prefs.TierPrefsView.resetValueBySelectedRow(TierPrefsView.java:492)
                  at com.affymetrix.igb.prefs.TierPrefsView.valueChanged(TierPrefsView.java:283)
                  at com.affymetrix.igb.prefs.TierPrefsView.trackstylePropertyChanged(TierPrefsView.java:691)
                  at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47)
                  at com.affymetrix.igb.shared.TrackstylePropertyMonitor.tableChanged(TrackstylePropertyMonitor.java:29)
                  at javax.swing.table.AbstractTableModel.fireTableChanged(AbstractTableModel.java:280)
                  at javax.swing.table.AbstractTableModel.fireTableDataChanged(AbstractTableModel.java:182)
                  at com.affymetrix.igb.view.load.DataManagementTableModel.createVirtualFeatures(DataManagementTableModel.java:91)
                  at com.affymetrix.igb.view.load.GeneralLoadView$5.run(GeneralLoadView.java:448)
                  at com.affymetrix.genometryImpl.util.ThreadUtils.runOnEventQueue(ThreadUtils.java:29)
                  at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementTable(GeneralLoadView.java:444)
                  at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementView(GeneralLoadView.java:456)
                  at com.affymetrix.igb.view.SeqGroupView.chromosomeChanged(SeqGroupView.java:531)
                  at com.affymetrix.igb.view.SeqGroupView.seqSelectionChanged(SeqGroupView.java:514)
                  at com.affymetrix.genometryImpl.GenometryModel.fireSeqSelectionEvent(GenometryModel.java:208)
                  at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:188)
                  at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:171)
                  at com.affymetrix.igb.view.SeqGroupView.speciesCBChanged(SeqGroupView.java:292)
                  at com.affymetrix.igb.view.SeqGroupView.itemStateChanged(SeqGroupView.java:265)
                  at javax.swing.JComboBox.fireItemStateChanged(JComboBox.java:1205)
                  at javax.swing.JComboBox.selectedItemChanged(JComboBox.java:1262)
                  at javax.swing.JComboBox.contentsChanged(JComboBox.java:1309)
                  at javax.swing.AbstractListModel.fireContentsChanged(AbstractListModel.java:100)
                  at javax.swing.DefaultComboBoxModel.setSelectedItem(DefaultComboBoxModel.java:88)
                  at javax.swing.JComboBox.setSelectedItem(JComboBox.java:557)
                  at javax.swing.JComboBox.setSelectedIndex(JComboBox.java:603)
                  at javax.swing.plaf.basic.BasicComboPopup$Handler.mouseReleased(BasicComboPopup.java:831)
                  at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:273)
                  at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
                  at java.awt.Component.processMouseEvent(Component.java:6375)
                  at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
                  at com.apple.laf.AquaComboBoxPopup$1.processMouseEvent(AquaComboBoxPopup.java:132)
                  at java.awt.Component.processEvent(Component.java:6140)
                  at java.awt.Container.processEvent(Container.java:2083)
                  at java.awt.Component.dispatchEventImpl(Component.java:4737)
                  at java.awt.Container.dispatchEventImpl(Container.java:2141)
                  at java.awt.Component.dispatchEvent(Component.java:4565)
                  at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619)
                  at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280)
                  at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210)
                  at java.awt.Container.dispatchEventImpl(Container.java:2127)
                  at java.awt.Window.dispatchEventImpl(Window.java:2482)
                  at java.awt.Component.dispatchEvent(Component.java:4565)
                  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:684)
                  at java.awt.EventQueue.access$000(EventQueue.java:85)
                  at java.awt.EventQueue$1.run(EventQueue.java:643)
                  at java.awt.EventQueue$1.run(EventQueue.java:641)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
                  at java.awt.EventQueue$2.run(EventQueue.java:657)
                  at java.awt.EventQueue$2.run(EventQueue.java:655)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:654)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
                  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

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                  fwang4 Fuquan Wang (Inactive) added a comment - Getting a error box for 7.0.0 (11884) Mac: Error java.lang.IndexOutOfBoundsException: Index: 1, Size: 1 See console output for more details about this error. Console: ERROR: Error java.lang.IndexOutOfBoundsException: Index: 1, Size: 1 java.lang.IndexOutOfBoundsException: Index: 1, Size: 1 at java.util.ArrayList.RangeCheck(ArrayList.java:547) at java.util.ArrayList.get(ArrayList.java:322) at com.affymetrix.igb.prefs.TierPrefsView.resetValueBySelectedRow(TierPrefsView.java:492) at com.affymetrix.igb.prefs.TierPrefsView.valueChanged(TierPrefsView.java:283) at com.affymetrix.igb.prefs.TierPrefsView.trackstylePropertyChanged(TierPrefsView.java:691) at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47) at com.affymetrix.igb.shared.TrackstylePropertyMonitor.tableChanged(TrackstylePropertyMonitor.java:29) at javax.swing.table.AbstractTableModel.fireTableChanged(AbstractTableModel.java:280) at javax.swing.table.AbstractTableModel.fireTableDataChanged(AbstractTableModel.java:182) at com.affymetrix.igb.view.load.DataManagementTableModel.createVirtualFeatures(DataManagementTableModel.java:91) at com.affymetrix.igb.view.load.GeneralLoadView$5.run(GeneralLoadView.java:448) at com.affymetrix.genometryImpl.util.ThreadUtils.runOnEventQueue(ThreadUtils.java:29) at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementTable(GeneralLoadView.java:444) at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementView(GeneralLoadView.java:456) at com.affymetrix.igb.view.SeqGroupView.chromosomeChanged(SeqGroupView.java:531) at com.affymetrix.igb.view.SeqGroupView.seqSelectionChanged(SeqGroupView.java:514) at com.affymetrix.genometryImpl.GenometryModel.fireSeqSelectionEvent(GenometryModel.java:208) at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:188) at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:171) at com.affymetrix.igb.view.SeqGroupView.speciesCBChanged(SeqGroupView.java:292) at com.affymetrix.igb.view.SeqGroupView.itemStateChanged(SeqGroupView.java:265) at javax.swing.JComboBox.fireItemStateChanged(JComboBox.java:1205) at javax.swing.JComboBox.selectedItemChanged(JComboBox.java:1262) at javax.swing.JComboBox.contentsChanged(JComboBox.java:1309) at javax.swing.AbstractListModel.fireContentsChanged(AbstractListModel.java:100) at javax.swing.DefaultComboBoxModel.setSelectedItem(DefaultComboBoxModel.java:88) at javax.swing.JComboBox.setSelectedItem(JComboBox.java:557) at javax.swing.JComboBox.setSelectedIndex(JComboBox.java:603) at javax.swing.plaf.basic.BasicComboPopup$Handler.mouseReleased(BasicComboPopup.java:831) at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:273) at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272) at java.awt.Component.processMouseEvent(Component.java:6375) at javax.swing.JComponent.processMouseEvent(JComponent.java:3267) at com.apple.laf.AquaComboBoxPopup$1.processMouseEvent(AquaComboBoxPopup.java:132) at java.awt.Component.processEvent(Component.java:6140) at java.awt.Container.processEvent(Container.java:2083) at java.awt.Component.dispatchEventImpl(Component.java:4737) at java.awt.Container.dispatchEventImpl(Container.java:2141) at java.awt.Component.dispatchEvent(Component.java:4565) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210) at java.awt.Container.dispatchEventImpl(Container.java:2127) at java.awt.Window.dispatchEventImpl(Window.java:2482) at java.awt.Component.dispatchEvent(Component.java:4565) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:684) at java.awt.EventQueue.access$000(EventQueue.java:85) at java.awt.EventQueue$1.run(EventQueue.java:643) at java.awt.EventQueue$1.run(EventQueue.java:641) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) at java.awt.EventQueue$2.run(EventQueue.java:657) at java.awt.EventQueue$2.run(EventQueue.java:655) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.awt.EventQueue.dispatchEvent(EventQueue.java:654) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
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                  fwang4 Fuquan Wang (Inactive) added a comment -

                  Passed on 7.0.0 (11920) Mac.

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                  fwang4 Fuquan Wang (Inactive) added a comment - Passed on 7.0.0 (11920) Mac.

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                    • Assignee:
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                      Reporter:
                      lfrohman Lance Frohman (Inactive)
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