[BUG-244] Exception in prefs - ID: 3377599 - JIRA UNCC

Details

Type: Bug
Status: Closed (View Workflow)
Priority: Major
Resolution: Fixed
Labels:
None

Description

1) run igb
2) select "Species" (top option) in species CB
3) open File > Preferences...

I get the following exception:

Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: Row i
ndex out of range
at javax.swing.JTable.boundRow(Unknown Source)
at javax.swing.JTable.setRowSelectionInterval(Unknown Source)
at com.affymetrix.igb.view.TierPrefsView.setSelectedRows(TierPrefsView.j
ava:120)

Attachments

Issue Links

relates to

BUG-609 Preferences > Track default, Other Options and general Preferences issues

Closed

Activity

Descending order - Click to sort in ascending order

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Fuquan Wang (Inactive) added a comment - 11/Jun/12 6:29 AM

Passed on 7.0.0 (11920) Mac.

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Fuquan Wang (Inactive) added a comment - 11/Jun/12 6:29 AM Passed on 7.0.0 (11920) Mac.

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Fuquan Wang (Inactive) added a comment - 08/Jun/12 6:24 AM

Getting a error box for 7.0.0 (11884) Mac:

Error
java.lang.IndexOutOfBoundsException: Index: 1, Size: 1
See console output for more details about this error.

Console:
ERROR: Error
java.lang.IndexOutOfBoundsException: Index: 1, Size: 1
java.lang.IndexOutOfBoundsException: Index: 1, Size: 1
at java.util.ArrayList.RangeCheck(ArrayList.java:547)
at java.util.ArrayList.get(ArrayList.java:322)
at com.affymetrix.igb.prefs.TierPrefsView.resetValueBySelectedRow(TierPrefsView.java:492)
at com.affymetrix.igb.prefs.TierPrefsView.valueChanged(TierPrefsView.java:283)
at com.affymetrix.igb.prefs.TierPrefsView.trackstylePropertyChanged(TierPrefsView.java:691)
at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47)
at com.affymetrix.igb.shared.TrackstylePropertyMonitor.tableChanged(TrackstylePropertyMonitor.java:29)
at javax.swing.table.AbstractTableModel.fireTableChanged(AbstractTableModel.java:280)
at javax.swing.table.AbstractTableModel.fireTableDataChanged(AbstractTableModel.java:182)
at com.affymetrix.igb.view.load.DataManagementTableModel.createVirtualFeatures(DataManagementTableModel.java:91)
at com.affymetrix.igb.view.load.GeneralLoadView$5.run(GeneralLoadView.java:448)
at com.affymetrix.genometryImpl.util.ThreadUtils.runOnEventQueue(ThreadUtils.java:29)
at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementTable(GeneralLoadView.java:444)
at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementView(GeneralLoadView.java:456)
at com.affymetrix.igb.view.SeqGroupView.chromosomeChanged(SeqGroupView.java:531)
at com.affymetrix.igb.view.SeqGroupView.seqSelectionChanged(SeqGroupView.java:514)
at com.affymetrix.genometryImpl.GenometryModel.fireSeqSelectionEvent(GenometryModel.java:208)
at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:188)
at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:171)
at com.affymetrix.igb.view.SeqGroupView.speciesCBChanged(SeqGroupView.java:292)
at com.affymetrix.igb.view.SeqGroupView.itemStateChanged(SeqGroupView.java:265)
at javax.swing.JComboBox.fireItemStateChanged(JComboBox.java:1205)
at javax.swing.JComboBox.selectedItemChanged(JComboBox.java:1262)
at javax.swing.JComboBox.contentsChanged(JComboBox.java:1309)
at javax.swing.AbstractListModel.fireContentsChanged(AbstractListModel.java:100)
at javax.swing.DefaultComboBoxModel.setSelectedItem(DefaultComboBoxModel.java:88)
at javax.swing.JComboBox.setSelectedItem(JComboBox.java:557)
at javax.swing.JComboBox.setSelectedIndex(JComboBox.java:603)
at javax.swing.plaf.basic.BasicComboPopup$Handler.mouseReleased(BasicComboPopup.java:831)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:273)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
at java.awt.Component.processMouseEvent(Component.java:6375)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
at com.apple.laf.AquaComboBoxPopup$1.processMouseEvent(AquaComboBoxPopup.java:132)
at java.awt.Component.processEvent(Component.java:6140)
at java.awt.Container.processEvent(Container.java:2083)
at java.awt.Component.dispatchEventImpl(Component.java:4737)
at java.awt.Container.dispatchEventImpl(Container.java:2141)
at java.awt.Component.dispatchEvent(Component.java:4565)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210)
at java.awt.Container.dispatchEventImpl(Container.java:2127)
at java.awt.Window.dispatchEventImpl(Window.java:2482)
at java.awt.Component.dispatchEvent(Component.java:4565)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:684)
at java.awt.EventQueue.access$000(EventQueue.java:85)
at java.awt.EventQueue$1.run(EventQueue.java:643)
at java.awt.EventQueue$1.run(EventQueue.java:641)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
at java.awt.EventQueue$2.run(EventQueue.java:657)
at java.awt.EventQueue$2.run(EventQueue.java:655)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:654)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

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Fuquan Wang (Inactive) added a comment - 08/Jun/12 6:24 AM Getting a error box for 7.0.0 (11884) Mac: Error java.lang.IndexOutOfBoundsException: Index: 1, Size: 1 See console output for more details about this error. Console: ERROR: Error java.lang.IndexOutOfBoundsException: Index: 1, Size: 1 java.lang.IndexOutOfBoundsException: Index: 1, Size: 1 at java.util.ArrayList.RangeCheck(ArrayList.java:547) at java.util.ArrayList.get(ArrayList.java:322) at com.affymetrix.igb.prefs.TierPrefsView.resetValueBySelectedRow(TierPrefsView.java:492) at com.affymetrix.igb.prefs.TierPrefsView.valueChanged(TierPrefsView.java:283) at com.affymetrix.igb.prefs.TierPrefsView.trackstylePropertyChanged(TierPrefsView.java:691) at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47) at com.affymetrix.igb.shared.TrackstylePropertyMonitor.tableChanged(TrackstylePropertyMonitor.java:29) at javax.swing.table.AbstractTableModel.fireTableChanged(AbstractTableModel.java:280) at javax.swing.table.AbstractTableModel.fireTableDataChanged(AbstractTableModel.java:182) at com.affymetrix.igb.view.load.DataManagementTableModel.createVirtualFeatures(DataManagementTableModel.java:91) at com.affymetrix.igb.view.load.GeneralLoadView$5.run(GeneralLoadView.java:448) at com.affymetrix.genometryImpl.util.ThreadUtils.runOnEventQueue(ThreadUtils.java:29) at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementTable(GeneralLoadView.java:444) at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementView(GeneralLoadView.java:456) at com.affymetrix.igb.view.SeqGroupView.chromosomeChanged(SeqGroupView.java:531) at com.affymetrix.igb.view.SeqGroupView.seqSelectionChanged(SeqGroupView.java:514) at com.affymetrix.genometryImpl.GenometryModel.fireSeqSelectionEvent(GenometryModel.java:208) at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:188) at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:171) at com.affymetrix.igb.view.SeqGroupView.speciesCBChanged(SeqGroupView.java:292) at com.affymetrix.igb.view.SeqGroupView.itemStateChanged(SeqGroupView.java:265) at javax.swing.JComboBox.fireItemStateChanged(JComboBox.java:1205) at javax.swing.JComboBox.selectedItemChanged(JComboBox.java:1262) at javax.swing.JComboBox.contentsChanged(JComboBox.java:1309) at javax.swing.AbstractListModel.fireContentsChanged(AbstractListModel.java:100) at javax.swing.DefaultComboBoxModel.setSelectedItem(DefaultComboBoxModel.java:88) at javax.swing.JComboBox.setSelectedItem(JComboBox.java:557) at javax.swing.JComboBox.setSelectedIndex(JComboBox.java:603) at javax.swing.plaf.basic.BasicComboPopup$Handler.mouseReleased(BasicComboPopup.java:831) at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:273) at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272) at java.awt.Component.processMouseEvent(Component.java:6375) at javax.swing.JComponent.processMouseEvent(JComponent.java:3267) at com.apple.laf.AquaComboBoxPopup$1.processMouseEvent(AquaComboBoxPopup.java:132) at java.awt.Component.processEvent(Component.java:6140) at java.awt.Container.processEvent(Container.java:2083) at java.awt.Component.dispatchEventImpl(Component.java:4737) at java.awt.Container.dispatchEventImpl(Container.java:2141) at java.awt.Component.dispatchEvent(Component.java:4565) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210) at java.awt.Container.dispatchEventImpl(Container.java:2127) at java.awt.Window.dispatchEventImpl(Window.java:2482) at java.awt.Component.dispatchEvent(Component.java:4565) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:684) at java.awt.EventQueue.access$000(EventQueue.java:85) at java.awt.EventQueue$1.run(EventQueue.java:643) at java.awt.EventQueue$1.run(EventQueue.java:641) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) at java.awt.EventQueue$2.run(EventQueue.java:657) at java.awt.EventQueue$2.run(EventQueue.java:655) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.awt.EventQueue.dispatchEvent(EventQueue.java:654) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

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David Norris (Inactive) added a comment - 18/Jan/12 5:39 AM

I did find another NPE in the process of trying to reproduce this though ... it is fixed in r9830.

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David Norris (Inactive) added a comment - 18/Jan/12 5:39 AM I did find another NPE in the process of trying to reproduce this though ... it is fixed in r9830.

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David Norris (Inactive) added a comment - 18/Jan/12 5:27 AM

Cannot reproduce...

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David Norris (Inactive) added a comment - 18/Jan/12 5:27 AM Cannot reproduce...

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Alyssa Gulledge (Inactive) added a comment - 12/Jan/12 9:21 AM - edited

So now if you load up a species (A thal) when you return to 'species' there are still tracks listed in the panel - and if you click on the color squares for the track still listed, you get this error:

Exception in thread "AWT-EventQueue-0" java.lang.NoClassDefFoundError: sun/awt/EmbeddedFrame
at com.jidesoft.popup.JidePopup.handleWindowEvent(Unknown Source)
at com.jidesoft.popup.JidePopup$15.eventDispatched(Unknown Source)
at java.awt.Toolkit$SelectiveAWTEventListener.eventDispatched(Toolkit.java:2366)
at java.awt.Toolkit$ToolkitEventMulticaster.eventDispatched(Toolkit.java:2258)
at java.awt.Toolkit.notifyAWTEventListeners(Toolkit.java:2216)
at java.awt.Component.dispatchEventImpl(Component.java:4633)
at java.awt.Container.dispatchEventImpl(Container.java:2143)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4565)
at java.awt.KeyboardFocusManager.redispatchEvent(KeyboardFocusManager.java:1850)
at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(DefaultKeyboardFocusManager.java:910)
at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:592)
at java.awt.Component.dispatchEventImpl(Component.java:4607)
at java.awt.Container.dispatchEventImpl(Container.java:2143)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4565)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:679)
at java.awt.EventQueue.access$000(EventQueue.java:85)
at java.awt.EventQueue$1.run(EventQueue.java:638)
at java.awt.EventQueue$1.run(EventQueue.java:636)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
at java.awt.EventQueue$2.run(EventQueue.java:652)
at java.awt.EventQueue$2.run(EventQueue.java:650)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)
at java.awt.SentEvent.dispatch(SentEvent.java:55)
at java.awt.DefaultKeyboardFocusManager$DefaultKeyboardFocusManagerSentEvent.dispatch(DefaultKeyboardFocusManager.java:183)
at java.awt.DefaultKeyboardFocusManager.sendMessage(DefaultKeyboardFocusManager.java:210)
at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:660)
at java.awt.Component.dispatchEventImpl(Component.java:4607)
at java.awt.Container.dispatchEventImpl(Container.java:2143)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4565)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:679)
at java.awt.EventQueue.access$000(EventQueue.java:85)
at java.awt.EventQueue$1.run(EventQueue.java:638)
at java.awt.EventQueue$1.run(EventQueue.java:636)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
at java.awt.EventQueue$2.run(EventQueue.java:652)
at java.awt.EventQueue$2.run(EventQueue.java:650)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)
at java.awt.SequencedEvent.dispatch(SequencedEvent.java:101)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:677)
at java.awt.EventQueue.access$000(EventQueue.java:85)
at java.awt.EventQueue$1.run(EventQueue.java:638)
at java.awt.EventQueue$1.run(EventQueue.java:636)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
at java.awt.EventQueue$2.run(EventQueue.java:652)
at java.awt.EventQueue$2.run(EventQueue.java:650)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Caused by: java.lang.ClassNotFoundException: sun.awt.EmbeddedFrame not found by jide [23]
at org.apache.felix.framework.BundleWiringImpl.findClassOrResourceByDelegation(BundleWiringImpl.java:1460)
at org.apache.felix.framework.BundleWiringImpl.access$400(BundleWiringImpl.java:72)
at org.apache.felix.framework.BundleWiringImpl$BundleClassLoader.loadClass(BundleWiringImpl.java:1843)
at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
... 67 more

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Alyssa Gulledge (Inactive) added a comment - 12/Jan/12 9:21 AM - edited So now if you load up a species (A thal) when you return to 'species' there are still tracks listed in the panel - and if you click on the color squares for the track still listed, you get this error: Exception in thread "AWT-EventQueue-0" java.lang.NoClassDefFoundError: sun/awt/EmbeddedFrame at com.jidesoft.popup.JidePopup.handleWindowEvent(Unknown Source) at com.jidesoft.popup.JidePopup$15.eventDispatched(Unknown Source) at java.awt.Toolkit$SelectiveAWTEventListener.eventDispatched(Toolkit.java:2366) at java.awt.Toolkit$ToolkitEventMulticaster.eventDispatched(Toolkit.java:2258) at java.awt.Toolkit.notifyAWTEventListeners(Toolkit.java:2216) at java.awt.Component.dispatchEventImpl(Component.java:4633) at java.awt.Container.dispatchEventImpl(Container.java:2143) at java.awt.Window.dispatchEventImpl(Window.java:2478) at java.awt.Component.dispatchEvent(Component.java:4565) at java.awt.KeyboardFocusManager.redispatchEvent(KeyboardFocusManager.java:1850) at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(DefaultKeyboardFocusManager.java:910) at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:592) at java.awt.Component.dispatchEventImpl(Component.java:4607) at java.awt.Container.dispatchEventImpl(Container.java:2143) at java.awt.Window.dispatchEventImpl(Window.java:2478) at java.awt.Component.dispatchEvent(Component.java:4565) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:679) at java.awt.EventQueue.access$000(EventQueue.java:85) at java.awt.EventQueue$1.run(EventQueue.java:638) at java.awt.EventQueue$1.run(EventQueue.java:636) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) at java.awt.EventQueue$2.run(EventQueue.java:652) at java.awt.EventQueue$2.run(EventQueue.java:650) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.awt.EventQueue.dispatchEvent(EventQueue.java:649) at java.awt.SentEvent.dispatch(SentEvent.java:55) at java.awt.DefaultKeyboardFocusManager$DefaultKeyboardFocusManagerSentEvent.dispatch(DefaultKeyboardFocusManager.java:183) at java.awt.DefaultKeyboardFocusManager.sendMessage(DefaultKeyboardFocusManager.java:210) at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:660) at java.awt.Component.dispatchEventImpl(Component.java:4607) at java.awt.Container.dispatchEventImpl(Container.java:2143) at java.awt.Window.dispatchEventImpl(Window.java:2478) at java.awt.Component.dispatchEvent(Component.java:4565) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:679) at java.awt.EventQueue.access$000(EventQueue.java:85) at java.awt.EventQueue$1.run(EventQueue.java:638) at java.awt.EventQueue$1.run(EventQueue.java:636) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) at java.awt.EventQueue$2.run(EventQueue.java:652) at java.awt.EventQueue$2.run(EventQueue.java:650) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.awt.EventQueue.dispatchEvent(EventQueue.java:649) at java.awt.SequencedEvent.dispatch(SequencedEvent.java:101) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:677) at java.awt.EventQueue.access$000(EventQueue.java:85) at java.awt.EventQueue$1.run(EventQueue.java:638) at java.awt.EventQueue$1.run(EventQueue.java:636) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) at java.awt.EventQueue$2.run(EventQueue.java:652) at java.awt.EventQueue$2.run(EventQueue.java:650) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.awt.EventQueue.dispatchEvent(EventQueue.java:649) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) Caused by: java.lang.ClassNotFoundException: sun.awt.EmbeddedFrame not found by jide [23] at org.apache.felix.framework.BundleWiringImpl.findClassOrResourceByDelegation(BundleWiringImpl.java:1460) at org.apache.felix.framework.BundleWiringImpl.access$400(BundleWiringImpl.java:72) at org.apache.felix.framework.BundleWiringImpl$BundleClassLoader.loadClass(BundleWiringImpl.java:1843) at java.lang.ClassLoader.loadClass(ClassLoader.java:247) ... 67 more

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David Norris (Inactive) added a comment - 22/Aug/11 8:10 AM

Alyssa, reproducing this bug required another species and genome be loaded before returning to the "Species" selection and opening the preferences panel. Also you will notice I now disable all panel elements when the table is empty to prevent the bug you noticed (which was unique from the bug Lance reported).

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David Norris (Inactive) added a comment - 22/Aug/11 8:10 AM Alyssa, reproducing this bug required another species and genome be loaded before returning to the "Species" selection and opening the preferences panel. Also you will notice I now disable all panel elements when the table is empty to prevent the bug you noticed (which was unique from the bug Lance reported).

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David Norris (Inactive) added a comment - 22/Aug/11 8:08 AM

Fixed in revision 8715

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David Norris (Inactive) added a comment - 22/Aug/11 8:08 AM Fixed in revision 8715

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Alyssa Gulledge (Inactive) added a comment - 19/Aug/11 6:48 AM

When I tried it (version 8702), I got this one:

Completed loading residues for chr21 from NetAffx QuickLoad
Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: Row index out of range
at javax.swing.JTable.boundRow(JTable.java:2106)
at javax.swing.JTable.setRowSelectionInterval(JTable.java:2129)
at com.affymetrix.igb.view.TierPrefsView.refreshList(TierPrefsView.java:791)
at com.affymetrix.igb.view.TierPrefsView.refresh(TierPrefsView.java:757)
at com.affymetrix.igb.prefs.PreferencesPanel.getFrame(PreferencesPanel.java:174)
at com.affymetrix.igb.action.PreferencesAction.actionPerformed(PreferencesAction.java:29)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
at javax.swing.AbstractButton.doClick(AbstractButton.java:389)
at com.apple.laf.ScreenMenuItem.actionPerformed(ScreenMenuItem.java:95)
at java.awt.MenuItem.processActionEvent(MenuItem.java:627)
at java.awt.MenuItem.processEvent(MenuItem.java:586)
at java.awt.MenuComponent.dispatchEventImpl(MenuComponent.java:317)
at java.awt.MenuComponent.dispatchEvent(MenuComponent.java:305)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:638)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

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Alyssa Gulledge (Inactive) added a comment - 19/Aug/11 6:48 AM When I tried it (version 8702), I got this one: Completed loading residues for chr21 from NetAffx QuickLoad Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: Row index out of range at javax.swing.JTable.boundRow(JTable.java:2106) at javax.swing.JTable.setRowSelectionInterval(JTable.java:2129) at com.affymetrix.igb.view.TierPrefsView.refreshList(TierPrefsView.java:791) at com.affymetrix.igb.view.TierPrefsView.refresh(TierPrefsView.java:757) at com.affymetrix.igb.prefs.PreferencesPanel.getFrame(PreferencesPanel.java:174) at com.affymetrix.igb.action.PreferencesAction.actionPerformed(PreferencesAction.java:29) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242) at javax.swing.AbstractButton.doClick(AbstractButton.java:389) at com.apple.laf.ScreenMenuItem.actionPerformed(ScreenMenuItem.java:95) at java.awt.MenuItem.processActionEvent(MenuItem.java:627) at java.awt.MenuItem.processEvent(MenuItem.java:586) at java.awt.MenuComponent.dispatchEventImpl(MenuComponent.java:317) at java.awt.MenuComponent.dispatchEvent(MenuComponent.java:305) at java.awt.EventQueue.dispatchEvent(EventQueue.java:638) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

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Assignee:

Unassigned

Reporter:

Lance Frohman (Inactive)

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Dates

Created:

19/Aug/11 5:10 AM

Updated:

06/Dec/12 9:15 AM

Resolved:

06/Dec/12 9:15 AM