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  1. Bug Repository
  2. BUG-268

Entry of Alphabetical characters into Sliced buffer text field which is in the sub-panel "Sliced view tab"

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None
          • Environment:

            MacOS

            Description

            When I tried to enter the alphabetical characters instead of numerical characters in the Sliced buffer textfield provided in the sliced view tab it just simply throws the following exception in the console but never alerts the user that he is entering wrong data.

            Exception in thread "AWT-EventQueue-0" java.lang.NumberFormatException: For input string: "asfsdgd"
            at java.lang.NumberFormatException.forInputString(NumberFormatException.java:48)
            at java.lang.Integer.parseInt(Integer.java:449)
            at java.lang.Integer.parseInt(Integer.java:499)
            at com.affymetrix.igb.view.AltSpliceView.actionPerformed(AltSpliceView.java:219)
            at javax.swing.JTextField.fireActionPerformed(JTextField.java:492)
            at javax.swing.JTextField.postActionEvent(JTextField.java:705)
            at javax.swing.JTextField$NotifyAction.actionPerformed(JTextField.java:820)
            at javax.swing.SwingUtilities.notifyAction(SwingUtilities.java:1645)
            at javax.swing.JComponent.processKeyBinding(JComponent.java:2851)
            at javax.swing.JComponent.processKeyBindings(JComponent.java:2886)
            at javax.swing.JComponent.processKeyEvent(JComponent.java:2814)
            at java.awt.Component.processEvent(Component.java:6150)
            at java.awt.Container.processEvent(Container.java:2085)
            at java.awt.Component.dispatchEventImpl(Component.java:4735)
            at java.awt.Container.dispatchEventImpl(Container.java:2143)
            at java.awt.Component.dispatchEvent(Component.java:4565)
            at java.awt.KeyboardFocusManager.redispatchEvent(KeyboardFocusManager.java:1850)
            at java.awt.DefaultKeyboardFocusManager.dispatchKeyEvent(DefaultKeyboardFocusManager.java:712)
            at java.awt.DefaultKeyboardFocusManager.preDispatchKeyEvent(DefaultKeyboardFocusManager.java:990)
            at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(DefaultKeyboardFocusManager.java:855)
            at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:676)
            at java.awt.Component.dispatchEventImpl(Component.java:4607)
            at java.awt.Container.dispatchEventImpl(Container.java:2143)
            at java.awt.Window.dispatchEventImpl(Window.java:2478)
            at java.awt.Component.dispatchEvent(Component.java:4565)
            at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:679)
            at java.awt.EventQueue.access$000(EventQueue.java:85)
            at java.awt.EventQueue$1.run(EventQueue.java:638)
            at java.awt.EventQueue$1.run(EventQueue.java:636)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
            at java.awt.EventQueue$2.run(EventQueue.java:652)
            at java.awt.EventQueue$2.run(EventQueue.java:650)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
            at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-661 Sliced View

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
                  anuj Anuj Puram (Inactive) created issue -
                  anuj Anuj Puram (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Hiral Vora [ hiralv ]
                  anuj Anuj Puram (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] David Norris [ david ]
                  Hide
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                  kkubiak Katharine Kubiak (Inactive) added a comment - - edited

                  Similar error thrown on Windows:

                  • When entering alpha characters OR when entering a number greater than 10 digits long

                  Exception in thread "AWT-EventQueue-0" java.lang.NumberFormatException: For input string: "abdflakfj"
                  at java.lang.NumberFormatException.forInputString(Unknown Source)
                  at java.lang.Integer.parseInt(Unknown Source)
                  at java.lang.Integer.parseInt(Unknown Source)
                  at com.affymetrix.igb.view.AltSpliceView.actionPerformed(AltSpliceView.java:219)
                  at javax.swing.JTextField.fireActionPerformed(Unknown Source)
                  at javax.swing.JTextField.postActionEvent(Unknown Source)
                  at javax.swing.JTextField$NotifyAction.actionPerformed(Unknown Source)
                  at javax.swing.SwingUtilities.notifyAction(Unknown Source)
                  at javax.swing.JComponent.processKeyBinding(Unknown Source)
                  at javax.swing.JComponent.processKeyBindings(Unknown Source)
                  at javax.swing.JComponent.processKeyEvent(Unknown Source)
                  at java.awt.Component.processEvent(Unknown Source)
                  at java.awt.Container.processEvent(Unknown Source)
                  at java.awt.Component.dispatchEventImpl(Unknown Source)
                  at java.awt.Container.dispatchEventImpl(Unknown Source)
                  at java.awt.Component.dispatchEvent(Unknown Source)
                  at java.awt.KeyboardFocusManager.redispatchEvent(Unknown Source)
                  at java.awt.DefaultKeyboardFocusManager.dispatchKeyEvent(Unknown Source)
                  at java.awt.DefaultKeyboardFocusManager.preDispatchKeyEvent(Unknown Source)
                  at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(Unknown Source)
                  at java.awt.DefaultKeyboardFocusManager.dispatchEvent(Unknown Source)
                  at java.awt.Component.dispatchEventImpl(Unknown Source)
                  at java.awt.Container.dispatchEventImpl(Unknown Source)
                  at java.awt.Window.dispatchEventImpl(Unknown Source)
                  at java.awt.Component.dispatchEvent(Unknown Source)
                  at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
                  at java.awt.EventQueue.access$000(Unknown Source)
                  at java.awt.EventQueue$1.run(Unknown Source)
                  at java.awt.EventQueue$1.run(Unknown Source)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
                  at java.awt.EventQueue$2.run(Unknown Source)
                  at java.awt.EventQueue$2.run(Unknown Source)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
                  at java.awt.EventQueue.dispatchEvent(Unknown Source)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
                  at java.awt.EventDispatchThread.run(Unknown Source)

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - - edited Similar error thrown on Windows: When entering alpha characters OR when entering a number greater than 10 digits long Exception in thread "AWT-EventQueue-0" java.lang.NumberFormatException: For input string: "abdflakfj" at java.lang.NumberFormatException.forInputString(Unknown Source) at java.lang.Integer.parseInt(Unknown Source) at java.lang.Integer.parseInt(Unknown Source) at com.affymetrix.igb.view.AltSpliceView.actionPerformed(AltSpliceView.java:219) at javax.swing.JTextField.fireActionPerformed(Unknown Source) at javax.swing.JTextField.postActionEvent(Unknown Source) at javax.swing.JTextField$NotifyAction.actionPerformed(Unknown Source) at javax.swing.SwingUtilities.notifyAction(Unknown Source) at javax.swing.JComponent.processKeyBinding(Unknown Source) at javax.swing.JComponent.processKeyBindings(Unknown Source) at javax.swing.JComponent.processKeyEvent(Unknown Source) at java.awt.Component.processEvent(Unknown Source) at java.awt.Container.processEvent(Unknown Source) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.KeyboardFocusManager.redispatchEvent(Unknown Source) at java.awt.DefaultKeyboardFocusManager.dispatchKeyEvent(Unknown Source) at java.awt.DefaultKeyboardFocusManager.preDispatchKeyEvent(Unknown Source) at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(Unknown Source) at java.awt.DefaultKeyboardFocusManager.dispatchEvent(Unknown Source) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Window.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$000(Unknown Source) at java.awt.EventQueue$1.run(Unknown Source) at java.awt.EventQueue$1.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue$2.run(Unknown Source) at java.awt.EventQueue$2.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source)
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                  david David Norris (Inactive) added a comment -

                  I think its obvious this is the wrong sort of data to be entering in this box, but I have caught the exception to handle this situation. I have no plans to alert the user. r9997

                  Show
                  david David Norris (Inactive) added a comment - I think its obvious this is the wrong sort of data to be entering in this box, but I have caught the exception to handle this situation. I have no plans to alert the user. r9997
                  david David Norris (Inactive) made changes -
                  Assignee David Norris [ david ] Alyssa Gulledge [ alyssa ]
                  Hide
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Can you:

                  1. if the number is too large, change it to show the max in the box (ie put in 1000000 and hit enter - it doesn't get larger than the natural limit. The largest intron showing should be the maximum number shown in the box)

                  2. if any incorrect characters/symbols are entered, can you just clear the box after user hits return? This shows that the user put in invalid information and that the image was not changed.

                  Something to think about for the future might be a slider bar, like the ORF slider on the bottom right of the panel. Then there is a 'max' size limit and no entry box for stupid stuff.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - Can you: 1. if the number is too large, change it to show the max in the box (ie put in 1000000 and hit enter - it doesn't get larger than the natural limit. The largest intron showing should be the maximum number shown in the box) 2. if any incorrect characters/symbols are entered, can you just clear the box after user hits return? This shows that the user put in invalid information and that the image was not changed. Something to think about for the future might be a slider bar, like the ORF slider on the bottom right of the panel. Then there is a 'max' size limit and no entry box for stupid stuff.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] David Norris [ david ]
                  Hide
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                  david David Norris (Inactive) added a comment -

                  I discussed this with Hiral and he has said not to implement #1. No incorrect characters/symbols can be entered now. There is a filter on what is allowed to be typed which was not in place before.

                  Show
                  david David Norris (Inactive) added a comment - I discussed this with Hiral and he has said not to implement #1. No incorrect characters/symbols can be entered now. There is a filter on what is allowed to be typed which was not in place before.
                  david David Norris (Inactive) made changes -
                  Assignee David Norris [ david ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 6.7 [ 10040 ] Bug Repository [ 10030 ]
                  Key IGBB-266 BUG-268
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                  darius darius added a comment -

                  Passed 7.0 (11862)Mac

                  Show
                  darius darius added a comment - Passed 7.0 (11862)Mac
                  darius darius made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Darius Bost [ darius ]
                  darius darius made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Darius Bost [ darius ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-661 [ BUG-661 ]
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                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13780, Mac, Java 1.7.0_10

                  ONLY valid characters are numbers from 0-9. There is no limit to the length of the number input in this text field but when hitting 'Enter' nothing beyond 1,000,000,000 will work.

                  Show
                  richard Richard Linchangco (Inactive) added a comment - Passed V.13780, Mac, Java 1.7.0_10 ONLY valid characters are numbers from 0-9. There is no limit to the length of the number input in this text field but when hitting 'Enter' nothing beyond 1,000,000,000 will work.
                  richard Richard Linchangco (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      anuj Anuj Puram (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: