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  1. Bug Repository
  2. BUG-278

Activating ENSEMBL while a species on IGB quickload is selected throws an error

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            Loading a species that has IGB Quickload as a data source THEN activating 'Ensemble' (Pref> Data Source) throws the exception below.

            Data sources > configure > Activate ENSEMBL, load Vitis vinifera, no errors. Deselect ENSEMBL. Reselect ENSEMBL, get the following error.
            All other species without IGB Quickload do not have this error

            Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
            at com.affymetrix.igb.view.load.GeneralLoadUtils$1.finished(GeneralLoadUtils.java:800)
            at com.affymetrix.genometryImpl.thread.CThreadWorker.done(CThreadWorker.java:31)
            at javax.swing.SwingWorker$5.run(Unknown Source)
            at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(Unknown Source)
            at sun.swing.AccumulativeRunnable.run(Unknown Source)
            at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(Unknown Source)
            at javax.swing.Timer.fireActionPerformed(Unknown Source)
            at javax.swing.Timer$DoPostEvent.run(Unknown Source)
            at java.awt.event.InvocationEvent.dispatch(Unknown Source)
            at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
            at java.awt.EventQueue.access$000(Unknown Source)
            at java.awt.EventQueue$1.run(Unknown Source)
            at java.awt.EventQueue$1.run(Unknown Source)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
            at java.awt.EventQueue.dispatchEvent(Unknown Source)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
            at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
            at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
            at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
            at java.awt.EventDispatchThread.run(Unknown Source)

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-647 Server bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  darius darius added a comment -

                  Passed 7.0 (11861)

                  Show
                  darius darius added a comment - Passed 7.0 (11861)
                  Hide
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                  david David Norris (Inactive) added a comment -

                  Fixed in r10090

                  Show
                  david David Norris (Inactive) added a comment - Fixed in r10090
                  Hide
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                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited

                  Mac also. Console Error is:

                  Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
                  at com.affymetrix.igb.view.load.GeneralLoadUtils$1.finished(GeneralLoadUtils.java:800)
                  at com.affymetrix.genometryImpl.thread.CThreadWorker.done(CThreadWorker.java:31)
                  at javax.swing.SwingWorker$5.run(SwingWorker.java:717)
                  at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:814)
                  at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:95)
                  at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:824)
                  at javax.swing.Timer.fireActionPerformed(Timer.java:291)
                  at javax.swing.Timer$DoPostEvent.run(Timer.java:221)
                  at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
                  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:677)
                  at java.awt.EventQueue.access$000(EventQueue.java:85)
                  at java.awt.EventQueue$1.run(EventQueue.java:638)
                  at java.awt.EventQueue$1.run(EventQueue.java:636)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:647)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
                  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited Mac also. Console Error is: Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException at com.affymetrix.igb.view.load.GeneralLoadUtils$1.finished(GeneralLoadUtils.java:800) at com.affymetrix.genometryImpl.thread.CThreadWorker.done(CThreadWorker.java:31) at javax.swing.SwingWorker$5.run(SwingWorker.java:717) at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:814) at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:95) at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:824) at javax.swing.Timer.fireActionPerformed(Timer.java:291) at javax.swing.Timer$DoPostEvent.run(Timer.java:221) at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:677) at java.awt.EventQueue.access$000(EventQueue.java:85) at java.awt.EventQueue$1.run(EventQueue.java:638) at java.awt.EventQueue$1.run(EventQueue.java:636) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.awt.EventQueue.dispatchEvent(EventQueue.java:647) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      kkubiak Katharine Kubiak (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: