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  1. Bug Repository
  2. BUG-281

IOException when loading EST files from BioViz (Das2) server

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Minor
    • Resolution: Fixed
    • Labels:
      None

      Description

      Steps to reproduce:
      1. Load IGB 6.7
      2. Choose Bioviz Das2 server
      3. Check EST (Multimap) and EST single map files
      4. Click Load Data Button

      java.io.IOException: Could not parse bar-file header.
      at com.affymetrix.genometryImpl.parsers.graph.BarParser.parseBarHeader(BarParser.java:654)
      at com.affymetrix.genometryImpl.parsers.graph.BarParser.parse(BarParser.java:391)
      at com.affymetrix.genometryImpl.parsers.graph.BarParser.parse(BarParser.java:925)
      at com.affymetrix.genometryImpl.symloader.SymLoader.parse(SymLoader.java:383)
      at com.affymetrix.igb.featureloader.Das2.LoadFeaturesFromQuery(Das2.java:276)
      at com.affymetrix.igb.featureloader.Das2.loadSpan(Das2.java:77)
      at com.affymetrix.igb.featureloader.Das2.loadFeatures(Das2.java:57)
      at com.affymetrix.igb.view.load.GeneralLoadUtils.loadFeaturesForSym(GeneralLoadUtils.java:893)
      at com.affymetrix.igb.view.load.GeneralLoadUtils.access$200(GeneralLoadUtils.java:88)
      at com.affymetrix.igb.view.load.GeneralLoadUtils$2.runInBackground(GeneralLoadUtils.java:839)
      at com.affymetrix.igb.view.load.GeneralLoadUtils$2.runInBackground(GeneralLoadUtils.java:834)
      at com.affymetrix.genometryImpl.thread.CThreadWorker.doInBackground(CThreadWorker.java:38)
      at javax.swing.SwingWorker$1.call(SwingWorker.java:277)
      at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
      at java.util.concurrent.FutureTask.run(FutureTask.java:138)
      at javax.swing.SwingWorker.run(SwingWorker.java:316)
      at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
      at java.lang.Thread.run(Thread.java:680)
      Caused by: java.io.EOFException
      at java.io.DataInputStream.readFully(DataInputStream.java:180)
      at java.io.DataInputStream.readFully(DataInputStream.java:152)
      at com.affymetrix.genometryImpl.parsers.graph.BarParser.parseBarHeader(BarParser.java:629)
      ... 18 more

        Attachments

          Issue Links

            Activity

            david David Norris (Inactive) created issue -
            hiralv Hiral Vora (Inactive) made changes -
            Field Original Value New Value
            Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Open [ 1 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Project IGB 6.7 [ 10040 ] Bug Repository [ 10030 ]
            Key IGBB-313 BUG-281
            fwang4 Fuquan Wang (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Fuquan Wang [ fwang4 ]
            fwang4 Fuquan Wang (Inactive) made changes -
            Assignee Fuquan Wang [ fwang4 ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ] Katharine Kubiak [ kkubiak ]
            kkubiak Katharine Kubiak (Inactive) made changes -
            Assignee Katharine Kubiak [ kkubiak ] Alyssa Gulledge [ alyssa ]
            fwang4 Fuquan Wang (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            richard Richard Linchangco (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Resolved [ 5 ] Reopened [ 4 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue relates to BUG-622 [ BUG-622 ]
            richard Richard Linchangco (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue is blocked by BUG-647 [ BUG-647 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue is blocked by BUG-647 [ BUG-647 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Resolved [ 5 ] Reopened [ 4 ]
            Assignee Alyssa Gulledge [ alyssa ]
            richard Richard Linchangco (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Reopened [ 4 ] Closed [ 6 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]

              People

              • Assignee:
                Unassigned
                Reporter:
                david David Norris (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: