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  1. Bug Repository
  2. BUG-292

OutOfBounds error if a 'wrong' URL is entered in File > Open URL...

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      Load from URL, use any URL that is not specifically a file and get the following exception... (a 'good' URL is http://transvar.org/illumina/tophat_3_processed but you need the password to our data server)

      Exception in thread "AWT-EventQueue-0" java.lang.StringIndexOutOfBoundsException: String index out of range: -1
      at java.lang.String.substring(String.java:1937)
      at com.affymetrix.igb.featureloader.QuickLoad.detemineFriendlyName(QuickLoad.java:100)
      at com.affymetrix.igb.view.load.GeneralLoadUtils.getFeature(GeneralLoadUtils.java:1255)
      at com.affymetrix.igb.view.load.GeneralLoadUtils.openURI(GeneralLoadUtils.java:1150)
      at com.affymetrix.igb.IGBServiceImpl.openURI(IGBServiceImpl.java:381)
      at com.affymetrix.igb.shared.OpenURIAction.openURI(OpenURIAction.java:44)
      at com.affymetrix.igb.action.LoadURLAction.loadURL(LoadURLAction.java:79)
      at com.affymetrix.igb.action.LoadURLAction.actionPerformed(LoadURLAction.java:44)
      at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
      at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
      at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
      at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
      at javax.swing.AbstractButton.doClick(AbstractButton.java:389)
      at com.apple.laf.ScreenMenuItem.actionPerformed(ScreenMenuItem.java:95)
      at java.awt.MenuItem.processActionEvent(MenuItem.java:627)
      at java.awt.MenuItem.processEvent(MenuItem.java:586)
      at java.awt.MenuComponent.dispatchEventImpl(MenuComponent.java:337)
      at java.awt.MenuComponent.dispatchEvent(MenuComponent.java:325)
      at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:682)
      at java.awt.EventQueue.access$000(EventQueue.java:85)
      at java.awt.EventQueue$1.run(EventQueue.java:638)
      at java.awt.EventQueue$1.run(EventQueue.java:636)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
      at java.awt.EventQueue$2.run(EventQueue.java:652)
      at java.awt.EventQueue$2.run(EventQueue.java:650)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
      at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
      at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
      at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

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            alyssa Alyssa Gulledge (Inactive) created issue -
            hiralv Hiral Vora (Inactive) made changes -
            Field Original Value New Value
            Assignee Hiral Vora [ hiralv ] Nick Ren [ imnick ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Summary OutOfBounds error if a 'wrong' URL is entered in Load From URL... OutOfBounds error if a 'wrong' URL is entered in File > Open URL...
            Hide
            hiralv Hiral Vora (Inactive) added a comment -

            Fixed in r10110.

            Show
            hiralv Hiral Vora (Inactive) added a comment - Fixed in r10110.
            hiralv Hiral Vora (Inactive) made changes -
            Assignee Nick Ren [ imnick ] Alyssa Gulledge [ alyssa ]
            hiralv Hiral Vora (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
            Hide
            hiralv Hiral Vora (Inactive) added a comment -

            Fixed in r10135.

            Show
            hiralv Hiral Vora (Inactive) added a comment - Fixed in r10135.
            hiralv Hiral Vora (Inactive) made changes -
            Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Description Load from URL, use any URL that is not specifically a file and get the following exception... (a 'good' URL is http://transvar.org/illumina/tophat_3_processed/CoolHT2.bed but you need the password to our data server)


            Exception in thread "AWT-EventQueue-0" java.lang.StringIndexOutOfBoundsException: String index out of range: -1
            at java.lang.String.substring(String.java:1937)
            at com.affymetrix.igb.featureloader.QuickLoad.detemineFriendlyName(QuickLoad.java:100)
            at com.affymetrix.igb.view.load.GeneralLoadUtils.getFeature(GeneralLoadUtils.java:1255)
            at com.affymetrix.igb.view.load.GeneralLoadUtils.openURI(GeneralLoadUtils.java:1150)
            at com.affymetrix.igb.IGBServiceImpl.openURI(IGBServiceImpl.java:381)
            at com.affymetrix.igb.shared.OpenURIAction.openURI(OpenURIAction.java:44)
            at com.affymetrix.igb.action.LoadURLAction.loadURL(LoadURLAction.java:79)
            at com.affymetrix.igb.action.LoadURLAction.actionPerformed(LoadURLAction.java:44)
            at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
            at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
            at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
            at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
            at javax.swing.AbstractButton.doClick(AbstractButton.java:389)
            at com.apple.laf.ScreenMenuItem.actionPerformed(ScreenMenuItem.java:95)
            at java.awt.MenuItem.processActionEvent(MenuItem.java:627)
            at java.awt.MenuItem.processEvent(MenuItem.java:586)
            at java.awt.MenuComponent.dispatchEventImpl(MenuComponent.java:337)
            at java.awt.MenuComponent.dispatchEvent(MenuComponent.java:325)
            at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:682)
            at java.awt.EventQueue.access$000(EventQueue.java:85)
            at java.awt.EventQueue$1.run(EventQueue.java:638)
            at java.awt.EventQueue$1.run(EventQueue.java:636)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
            at java.awt.EventQueue$2.run(EventQueue.java:652)
            at java.awt.EventQueue$2.run(EventQueue.java:650)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
            at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
            Load from URL, use any URL that is not specifically a file and get the following exception... (a 'good' URL is http://transvar.org/illumina/tophat_3_processed but you need the password to our data server)


            Exception in thread "AWT-EventQueue-0" java.lang.StringIndexOutOfBoundsException: String index out of range: -1
            at java.lang.String.substring(String.java:1937)
            at com.affymetrix.igb.featureloader.QuickLoad.detemineFriendlyName(QuickLoad.java:100)
            at com.affymetrix.igb.view.load.GeneralLoadUtils.getFeature(GeneralLoadUtils.java:1255)
            at com.affymetrix.igb.view.load.GeneralLoadUtils.openURI(GeneralLoadUtils.java:1150)
            at com.affymetrix.igb.IGBServiceImpl.openURI(IGBServiceImpl.java:381)
            at com.affymetrix.igb.shared.OpenURIAction.openURI(OpenURIAction.java:44)
            at com.affymetrix.igb.action.LoadURLAction.loadURL(LoadURLAction.java:79)
            at com.affymetrix.igb.action.LoadURLAction.actionPerformed(LoadURLAction.java:44)
            at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
            at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
            at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
            at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
            at javax.swing.AbstractButton.doClick(AbstractButton.java:389)
            at com.apple.laf.ScreenMenuItem.actionPerformed(ScreenMenuItem.java:95)
            at java.awt.MenuItem.processActionEvent(MenuItem.java:627)
            at java.awt.MenuItem.processEvent(MenuItem.java:586)
            at java.awt.MenuComponent.dispatchEventImpl(MenuComponent.java:337)
            at java.awt.MenuComponent.dispatchEvent(MenuComponent.java:325)
            at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:682)
            at java.awt.EventQueue.access$000(EventQueue.java:85)
            at java.awt.EventQueue$1.run(EventQueue.java:638)
            at java.awt.EventQueue$1.run(EventQueue.java:636)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
            at java.awt.EventQueue$2.run(EventQueue.java:652)
            at java.awt.EventQueue$2.run(EventQueue.java:650)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
            at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Open [ 1 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Project IGB 6.7 [ 10040 ] Bug Repository [ 10030 ]
            Key IGBB-324 BUG-292
            fwang4 Fuquan Wang (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Fuquan Wang [ fwang4 ]
            Hide
            fwang4 Fuquan Wang (Inactive) added a comment -

            Passed on 7.0.0 (11845) Mac.

            Show
            fwang4 Fuquan Wang (Inactive) added a comment - Passed on 7.0.0 (11845) Mac.
            fwang4 Fuquan Wang (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Fuquan Wang [ fwang4 ]
            Resolution Fixed [ 1 ]
            richard Richard Linchangco (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Resolved [ 5 ] Reopened [ 4 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue relates to BUG-624 [ BUG-624 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]

              People

              • Assignee:
                Unassigned
                Reporter:
                alyssa Alyssa Gulledge (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: