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  1. Bug Repository
  2. BUG-313

Mismatch pileup

          Details

          • Type: Task
          • Status: Closed (View Workflow)
          • Priority: Minor
          • Resolution: Fixed
          • Labels:
            None

            Description

            One thing that would be great for the mismatch (or coverage) graph is for it to show using a stacked barchart the bases (using the same colors from the sequence view), that do not match the reference (and the reference counts could be gray or something). I think this is a fairly common plot found in IGV, etc.

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                is blocked by

                Task - A task that needs to be done. BUG-639 IGB generated graphs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  lfrohman Lance Frohman (Inactive) created issue -
                  lfrohman Lance Frohman (Inactive) made changes -
                  Field Original Value New Value
                  Status Open [ 1 ] Resolved [ 5 ]
                  Resolution Fixed [ 1 ]
                  lfrohman Lance Frohman (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Lance Frohman [ lfrohman ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project Genentech [ 10034 ] Bug Repository [ 10030 ]
                  Key TODO-18 BUG-313
                  fwang4 Fuquan Wang (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Fuquan Wang [ fwang4 ]
                  fwang4 Fuquan Wang (Inactive) made changes -
                  Comment [ Not tested on 7.0.0 (11920) Mac:

                  No idea on the issue and how to test. ]
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                  fwang4 Fuquan Wang (Inactive) added a comment -

                  Passed on 7.0.0 (11982) Mac.

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                  fwang4 Fuquan Wang (Inactive) added a comment - Passed on 7.0.0 (11982) Mac.
                  fwang4 Fuquan Wang (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Fuquan Wang [ fwang4 ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue is blocked by BUG-639 [ BUG-639 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      lfrohman Lance Frohman (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: