Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      log4j:WARN No appenders could be found for logger (org.broad.tribble.util.Seekab
      leHTTPStream).
      log4j:WARN Please initialize the log4j system properly.
      ERROR [2011-08-30 11:00:38,019] [?:?] [AWT-EventQueue-0] Error reading R+ tree
      header: bad magic = -2003829722
      ERROR [2011-08-30 11:00:38,019] [?:?] [AWT-EventQueue-0] Error reading R+ tree
      header: bad magic = -2003829722
      Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: Error reading
      R+ tree header: bad magic = -2003829722
      at org.broad.igv.bbfile.RPTree.<init>(Unknown Source)
      at org.broad.igv.bbfile.BBZoomLevels.<init>(Unknown Source)
      at org.broad.igv.bbfile.BBFileReader.<init>(Unknown Source)
      at com.gene.bigwighandler.BigWigSymLoader.<init>(Unknown Source)
      at com.gene.bigwighandler.BigWigHandler.createSymLoader(Unknown Source)
      at com.affymetrix.genometryImpl.util.ServerUtils.determineLoader(ServerU
      tils.java:1094)
      at com.affymetrix.igb.featureloader.QuickLoad.<init>(QuickLoad.java:63)
      at com.affymetrix.igb.action.LoadFileAction.getFeature(LoadFileAction.ja
      va:240)
      at com.affymetrix.igb.action.LoadFileAction.openURI(LoadFileAction.java:
      190)
      at com.affymetrix.igb.action.LoadURLAction.loadURL(LoadURLAction.java:77
      )
      at com.affymetrix.igb.action.LoadURLAction.actionPerformed(LoadURLAction
      .java:41)
      at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:19
      95)
      at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.jav
      a:2318)
      at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel
      .java:387)
      at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242
      )
      at javax.swing.AbstractButton.doClick(AbstractButton.java:357)
      at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:8
      09)
      at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMen
      uItemUI.java:850)
      at java.awt.Component.processMouseEvent(Component.java:6289)
      at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
      at java.awt.Component.processEvent(Component.java:6054)
      at java.awt.Container.processEvent(Container.java:2041)
      at java.awt.Component.dispatchEventImpl(Component.java:4652)
      at java.awt.Container.dispatchEventImpl(Container.java:2099)
      at java.awt.Component.dispatchEvent(Component.java:4482)
      at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577
      )
      at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)

      at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
      at java.awt.Container.dispatchEventImpl(Container.java:2085)
      at java.awt.Window.dispatchEventImpl(Window.java:2478)
      at java.awt.Component.dispatchEvent(Component.java:4482)
      at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
      at java.awt.EventQueue.access$000(EventQueue.java:85)
      at java.awt.EventQueue$1.run(EventQueue.java:603)
      at java.awt.EventQueue$1.run(EventQueue.java:601)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessCo
      ntrolContext.java:87)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessCo
      ntrolContext.java:98)
      at java.awt.EventQueue$2.run(EventQueue.java:617)
      at java.awt.EventQueue$2.run(EventQueue.java:615)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessCo
      ntrolContext.java:87)
      at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThre
      ad.java:269)
      at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.
      java:184)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThre
      ad.java:174)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)

      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)

      at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

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            Hide
            lfrohman Lance Frohman (Inactive) added a comment -

            fixed, but it won't work for ftp

            Show
            lfrohman Lance Frohman (Inactive) added a comment - fixed, but it won't work for ftp
            Hide
            fwang4 Fuquan Wang (Inactive) added a comment - - edited

            Passed for 7.0.0 (11982) Mac.

            Show
            fwang4 Fuquan Wang (Inactive) added a comment - - edited Passed for 7.0.0 (11982) Mac.

              People

              • Assignee:
                Unassigned
                Reporter:
                hiralv Hiral Vora (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: