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  1. Bug Repository
  2. BUG-331

NPE possibly when downloading sequence

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      Hi guys,

      Robert handed me this:


      INFO: URL: http://netaffxdas.affymetrix.com/quickload_data/H_sapiens_Feb_2009/chr1.bnib Response Code: 200
      java.lang.NullPointerException
      at com.affymetrix.genometryImpl.symmetry.SimpleMutableSeqSymmetry.removeChild(SimpleMutableSeqSymmetry.java:56)
      at com.affymetrix.genometryImpl.BioSeq.removeAnnotation(BioSeq.java:332)
      at com.affymetrix.genometryImpl.BioSeq.removeAnnotation(BioSeq.java:310)
      at com.affymetrix.igb.view.DependentData.createTier(DependentData.java:63)
      at com.affymetrix.igb.view.TrackView.updateDependentData(TrackView.java:288)
      at com.affymetrix.igb.featureloader.QuickLoad$1.doInBackground(QuickLoad.java:177)
      at com.affymetrix.igb.featureloader.QuickLoad$1.doInBackground(QuickLoad.java:161)
      at javax.swing.SwingWorker$1.call(SwingWorker.java:274)
      at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
      at java.util.concurrent.FutureTask.run(FutureTask.java:138)
      at javax.swing.SwingWorker.run(SwingWorker.java:313)
      at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
      at java.lang.Thread.run(Thread.java:637)

      Not sure what triggers this - but there are quite a few in the console (and this seems to be the only exception, there
      are a few other tidbits of INFO),

      Obviously, this is not a lot to go on, but maybe it's enough of a hint?

      Thanks

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          Issue Links

            Activity

            michafla Michael Lawrence (Inactive) created issue -
            hiralv Hiral Vora (Inactive) made changes -
            Field Original Value New Value
            Assignee Ann Loraine [ aloraine ] Hiral Vora [ hiralv ]
            hiralv Hiral Vora (Inactive) made changes -
            Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Open [ 1 ] Resolved [ 5 ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            david David Norris (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ]
            david David Norris (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Resolution Fixed [ 1 ]
            david David Norris (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Katharine Kubiak [ kkubiak ]
            kkubiak Katharine Kubiak (Inactive) made changes -
            Assignee Katharine Kubiak [ kkubiak ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
            hiralv Hiral Vora (Inactive) made changes -
            Project Bug Repository [ 10030 ] IGB 7.0 [ 10140 ]
            Key BUG-101 IGBC-61
            hiralv Hiral Vora (Inactive) made changes -
            Assignee Hiral Vora [ hiralv ]
            kkubiak Katharine Kubiak (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
            Key IGBC-61 BUG-331
            fwang4 Fuquan Wang (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Fuquan Wang [ fwang4 ]
            fwang4 Fuquan Wang (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Fuquan Wang [ fwang4 ]
            Resolution Fixed [ 1 ]
            richard Richard Linchangco (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Resolved [ 5 ] Reopened [ 4 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue relates to BUG-622 [ BUG-622 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Reopened [ 4 ] Closed [ 6 ]
            Resolution Fixed [ 1 ]

              People

              • Assignee:
                Unassigned
                Reporter:
                michafla Michael Lawrence (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: