Uploaded image for project: 'Bug Repository'
  1. Bug Repository
  2. BUG-343

Exception on Console by Map sites button click in Restriction sites tab

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None
          • Environment:

            Mac OS

            Description

            When I tried to select an enzymes in the Restriction sites tab and clicked on Map sites button the following exception is thrown in the console

            Exception in thread "pool-13-thread-2" java.lang.OutOfMemoryError: Java heap space
            at java.nio.HeapByteBuffer.<init>(HeapByteBuffer.java:39)
            at java.nio.ByteBuffer.allocate(ByteBuffer.java:312)
            at com.affymetrix.genometryImpl.util.TwoBitIterator.parse(TwoBitIterator.java:196)
            at com.affymetrix.genometryImpl.util.TwoBitIterator.substring(TwoBitIterator.java:176)
            at com.affymetrix.genometryImpl.symloader.TwoBit.getRegionResidues(TwoBit.java:88)
            at com.affymetrix.igb.general.ResidueLoading.GetQuickLoadResidues(ResidueLoading.java:219)
            at com.affymetrix.igb.general.ResidueLoading.getQuickLoadResidues(ResidueLoading.java:171)
            at com.affymetrix.igb.general.ResidueLoading.getResidues(ResidueLoading.java:86)
            at com.affymetrix.igb.view.load.GeneralLoadUtils.loadResidues(GeneralLoadUtils.java:992)
            at com.affymetrix.igb.view.load.GeneralLoadView.loadResidues(GeneralLoadView.java:230)
            at com.affymetrix.igb.view.load.GeneralLoadView.loadResidues(GeneralLoadView.java:223)
            at com.affymetrix.igb.action.LoadResidueAction.actionPerformed(LoadResidueAction.java:75)
            at com.affymetrix.igb.restrictions.RestrictionControlView$GlyphifyMatchesThread.run(RestrictionControlView.java:261)
            at java.lang.Thread.run(Thread.java:680)
            at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
            at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
            at java.lang.Thread.run(Thread.java:680)

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-656 Tabbed Panels including Selection, Restriction Enzymes

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
                  anuj Anuj Puram (Inactive) created issue -
                  anuj Anuj Puram (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Alyssa Gulledge [ alyssa ]
                  anuj Anuj Puram (Inactive) made changes -
                  Summary Exception on Console by Multiple selection of residue in Restriction sites tab Exception on Console by Multiple selection of enzymes in Restriction sites tab
                  Description When I tried to select a lot of residues in the Restriction sites tab and clicked on Map sites button the following exception is thrown in the console

                  Exception in thread "pool-13-thread-2" java.lang.OutOfMemoryError: Java heap space
                  at java.nio.HeapByteBuffer.<init>(HeapByteBuffer.java:39)
                  at java.nio.ByteBuffer.allocate(ByteBuffer.java:312)
                  at com.affymetrix.genometryImpl.util.TwoBitIterator.parse(TwoBitIterator.java:196)
                  at com.affymetrix.genometryImpl.util.TwoBitIterator.substring(TwoBitIterator.java:176)
                  at com.affymetrix.genometryImpl.symloader.TwoBit.getRegionResidues(TwoBit.java:88)
                  at com.affymetrix.igb.general.ResidueLoading.GetQuickLoadResidues(ResidueLoading.java:219)
                  at com.affymetrix.igb.general.ResidueLoading.getQuickLoadResidues(ResidueLoading.java:171)
                  at com.affymetrix.igb.general.ResidueLoading.getResidues(ResidueLoading.java:86)
                  at com.affymetrix.igb.view.load.GeneralLoadUtils.loadResidues(GeneralLoadUtils.java:992)
                  at com.affymetrix.igb.view.load.GeneralLoadView.loadResidues(GeneralLoadView.java:230)
                  at com.affymetrix.igb.view.load.GeneralLoadView.loadResidues(GeneralLoadView.java:223)
                  at com.affymetrix.igb.action.LoadResidueAction.actionPerformed(LoadResidueAction.java:75)
                  at com.affymetrix.igb.restrictions.RestrictionControlView$GlyphifyMatchesThread.run(RestrictionControlView.java:261)
                  at java.lang.Thread.run(Thread.java:680)
                  at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
                  at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
                  at java.lang.Thread.run(Thread.java:680)                   		When I tried to select a lot of enzymes in the Restriction sites tab and clicked on Map sites button the following exception is thrown in the console

                  Exception in thread "pool-13-thread-2" java.lang.OutOfMemoryError: Java heap space
                  at java.nio.HeapByteBuffer.<init>(HeapByteBuffer.java:39)
                  at java.nio.ByteBuffer.allocate(ByteBuffer.java:312)
                  at com.affymetrix.genometryImpl.util.TwoBitIterator.parse(TwoBitIterator.java:196)
                  at com.affymetrix.genometryImpl.util.TwoBitIterator.substring(TwoBitIterator.java:176)
                  at com.affymetrix.genometryImpl.symloader.TwoBit.getRegionResidues(TwoBit.java:88)
                  at com.affymetrix.igb.general.ResidueLoading.GetQuickLoadResidues(ResidueLoading.java:219)
                  at com.affymetrix.igb.general.ResidueLoading.getQuickLoadResidues(ResidueLoading.java:171)
                  at com.affymetrix.igb.general.ResidueLoading.getResidues(ResidueLoading.java:86)
                  at com.affymetrix.igb.view.load.GeneralLoadUtils.loadResidues(GeneralLoadUtils.java:992)
                  at com.affymetrix.igb.view.load.GeneralLoadView.loadResidues(GeneralLoadView.java:230)
                  at com.affymetrix.igb.view.load.GeneralLoadView.loadResidues(GeneralLoadView.java:223)
                  at com.affymetrix.igb.action.LoadResidueAction.actionPerformed(LoadResidueAction.java:75)
                  at com.affymetrix.igb.restrictions.RestrictionControlView$GlyphifyMatchesThread.run(RestrictionControlView.java:261)
                  at java.lang.Thread.run(Thread.java:680)
                  at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
                  at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
                  at java.lang.Thread.run(Thread.java:680)
                  anuj Anuj Puram (Inactive) made changes -
                  Summary Exception on Console by Multiple selection of enzymes in Restriction sites tab Exception on Console by Map sites button click in Restriction sites tab
                  Description When I tried to select a lot of enzymes in the Restriction sites tab and clicked on Map sites button the following exception is thrown in the console

                  Exception in thread "pool-13-thread-2" java.lang.OutOfMemoryError: Java heap space
                  at java.nio.HeapByteBuffer.<init>(HeapByteBuffer.java:39)
                  at java.nio.ByteBuffer.allocate(ByteBuffer.java:312)
                  at com.affymetrix.genometryImpl.util.TwoBitIterator.parse(TwoBitIterator.java:196)
                  at com.affymetrix.genometryImpl.util.TwoBitIterator.substring(TwoBitIterator.java:176)
                  at com.affymetrix.genometryImpl.symloader.TwoBit.getRegionResidues(TwoBit.java:88)
                  at com.affymetrix.igb.general.ResidueLoading.GetQuickLoadResidues(ResidueLoading.java:219)
                  at com.affymetrix.igb.general.ResidueLoading.getQuickLoadResidues(ResidueLoading.java:171)
                  at com.affymetrix.igb.general.ResidueLoading.getResidues(ResidueLoading.java:86)
                  at com.affymetrix.igb.view.load.GeneralLoadUtils.loadResidues(GeneralLoadUtils.java:992)
                  at com.affymetrix.igb.view.load.GeneralLoadView.loadResidues(GeneralLoadView.java:230)
                  at com.affymetrix.igb.view.load.GeneralLoadView.loadResidues(GeneralLoadView.java:223)
                  at com.affymetrix.igb.action.LoadResidueAction.actionPerformed(LoadResidueAction.java:75)
                  at com.affymetrix.igb.restrictions.RestrictionControlView$GlyphifyMatchesThread.run(RestrictionControlView.java:261)
                  at java.lang.Thread.run(Thread.java:680)
                  at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
                  at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
                  at java.lang.Thread.run(Thread.java:680)                   		When I tried to select an enzymes in the Restriction sites tab and clicked on Map sites button the following exception is thrown in the console

                  Exception in thread "pool-13-thread-2" java.lang.OutOfMemoryError: Java heap space
                  at java.nio.HeapByteBuffer.<init>(HeapByteBuffer.java:39)
                  at java.nio.ByteBuffer.allocate(ByteBuffer.java:312)
                  at com.affymetrix.genometryImpl.util.TwoBitIterator.parse(TwoBitIterator.java:196)
                  at com.affymetrix.genometryImpl.util.TwoBitIterator.substring(TwoBitIterator.java:176)
                  at com.affymetrix.genometryImpl.symloader.TwoBit.getRegionResidues(TwoBit.java:88)
                  at com.affymetrix.igb.general.ResidueLoading.GetQuickLoadResidues(ResidueLoading.java:219)
                  at com.affymetrix.igb.general.ResidueLoading.getQuickLoadResidues(ResidueLoading.java:171)
                  at com.affymetrix.igb.general.ResidueLoading.getResidues(ResidueLoading.java:86)
                  at com.affymetrix.igb.view.load.GeneralLoadUtils.loadResidues(GeneralLoadUtils.java:992)
                  at com.affymetrix.igb.view.load.GeneralLoadView.loadResidues(GeneralLoadView.java:230)
                  at com.affymetrix.igb.view.load.GeneralLoadView.loadResidues(GeneralLoadView.java:223)
                  at com.affymetrix.igb.action.LoadResidueAction.actionPerformed(LoadResidueAction.java:75)
                  at com.affymetrix.igb.restrictions.RestrictionControlView$GlyphifyMatchesThread.run(RestrictionControlView.java:261)
                  at java.lang.Thread.run(Thread.java:680)
                  at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
                  at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
                  at java.lang.Thread.run(Thread.java:680)
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Project IGB 6.7 [ 10040 ] IGB 7.0 [ 10140 ]
                  Key IGBB-282 IGBC-54
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Anuj Puram [ anuj ]
                  anuj Anuj Puram (Inactive) made changes -
                  Assignee Anuj Puram [ anuj ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
                  Key IGBC-54 BUG-343
                  fwang4 Fuquan Wang (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Fuquan Wang [ fwang4 ]
                  fwang4 Fuquan Wang (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Fuquan Wang [ fwang4 ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-656 [ BUG-656 ]
                  darius darius made changes -
                  Assignee Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      anuj Anuj Puram (Inactive)
                    • Votes:
                      0 Vote for this issue
                      Watchers:
                      0 Start watching this issue

                      Dates

                      • Created:
                        Updated:
                        Resolved: