Details
-
Type:
Bug
-
Status: Closed (View Workflow)
-
Priority:
Major
-
Resolution: Fixed
-
Labels:None
Description
Windows v11235
Every time I choose a species from either clicking on a picture or from the drop down box under 'Current Genome' the error below is thrown. I have tried resetting my preferences several times, clearing cache, and tested with different species and still get this error.
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.getDepth(AnnotationGlyphFactory.java:104)
at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.addLeafsToTier(AnnotationGlyphFactory.java:114)
at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.getViewModeGlyph(AnnotationGlyphFactory.java:579)
at com.affymetrix.igb.view.TrackView.getTrack(TrackView.java:98)
at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:836)
at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:832)
at com.affymetrix.igb.view.TrackView.addTierFor(TrackView.java:406)
at com.affymetrix.igb.view.TrackView.addEmptyTierFor(TrackView.java:378)
at com.affymetrix.igb.view.TrackView.addDependentAndEmptyTrack(TrackView.java:163)
at com.affymetrix.igb.view.SeqMapView.addDependentAndEmptyTrack(SeqMapView.java:1191)
at com.affymetrix.igb.view.SeqMapView.addAnnotationTracks(SeqMapView.java:1122)
at com.affymetrix.igb.view.SeqMapView.addGlyphs(SeqMapView.java:894)
at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:727)
at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:652)
at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:639)
at com.affymetrix.igb.view.SeqMapView.seqSelectionChanged(SeqMapView.java:2091)
at com.affymetrix.genometryImpl.GenometryModel.fireSeqSelectionEvent(GenometryModel.java:207)
at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:187)
at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:170)
at com.affymetrix.igb.view.SeqGroupView$InitVersionWorker.done(SeqGroupView.java:929)
at javax.swing.SwingWorker$5.run(Unknown Source)
at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(Unknown Source)
at sun.swing.AccumulativeRunnable.run(Unknown Source)
at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(Unknown Source)
at javax.swing.Timer.fireActionPerformed(Unknown Source)
at javax.swing.Timer$DoPostEvent.run(Unknown Source)
at java.awt.event.InvocationEvent.dispatch(Unknown Source)
at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
at java.awt.EventQueue.access$000(Unknown Source)
at java.awt.EventQueue$1.run(Unknown Source)
at java.awt.EventQueue$1.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
at java.awt.EventQueue.dispatchEvent(Unknown Source)
at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.run(Unknown Source)
Attachments
Issue Links
- relates to
-
BUG-651 Windows specific bugs
-
- Closed
-
Activity
| Field | Original Value | New Value |
|---|---|---|
| Assignee | Alyssa Gulledge [ alyssa ] |
| Description |
Windows v11235 Every time I choose a species from either clicking on a picture or from the drop down box under 'Current Genome' the error below is thrown. I have tried reseting my preferences several times, clearing cache, and tested with different species and still get this error. Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.getDepth(AnnotationGlyphFactory.java:104) at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.addLeafsToTier(AnnotationGlyphFactory.java:114) at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.getViewModeGlyph(AnnotationGlyphFactory.java:579) at com.affymetrix.igb.view.TrackView.getTrack(TrackView.java:98) at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:836) at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:832) at com.affymetrix.igb.view.TrackView.addTierFor(TrackView.java:406) at com.affymetrix.igb.view.TrackView.addEmptyTierFor(TrackView.java:378) at com.affymetrix.igb.view.TrackView.addDependentAndEmptyTrack(TrackView.java:163) at com.affymetrix.igb.view.SeqMapView.addDependentAndEmptyTrack(SeqMapView.java:1191) at com.affymetrix.igb.view.SeqMapView.addAnnotationTracks(SeqMapView.java:1122) at com.affymetrix.igb.view.SeqMapView.addGlyphs(SeqMapView.java:894) at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:727) at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:652) at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:639) at com.affymetrix.igb.view.SeqMapView.seqSelectionChanged(SeqMapView.java:2091) at com.affymetrix.genometryImpl.GenometryModel.fireSeqSelectionEvent(GenometryModel.java:207) at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:187) at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:170) at com.affymetrix.igb.view.SeqGroupView$InitVersionWorker.done(SeqGroupView.java:929) at javax.swing.SwingWorker$5.run(Unknown Source) at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(Unknown Source) at sun.swing.AccumulativeRunnable.run(Unknown Source) at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(Unknown Source) at javax.swing.Timer.fireActionPerformed(Unknown Source) at javax.swing.Timer$DoPostEvent.run(Unknown Source) at java.awt.event.InvocationEvent.dispatch(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$000(Unknown Source) at java.awt.EventQueue$1.run(Unknown Source) at java.awt.EventQueue$1.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) |
Windows v11235 Every time I choose a species from either clicking on a picture or from the drop down box under 'Current Genome' the error below is thrown. I have tried resetting my preferences several times, clearing cache, and tested with different species and still get this error. Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.getDepth(AnnotationGlyphFactory.java:104) at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.addLeafsToTier(AnnotationGlyphFactory.java:114) at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.getViewModeGlyph(AnnotationGlyphFactory.java:579) at com.affymetrix.igb.view.TrackView.getTrack(TrackView.java:98) at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:836) at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:832) at com.affymetrix.igb.view.TrackView.addTierFor(TrackView.java:406) at com.affymetrix.igb.view.TrackView.addEmptyTierFor(TrackView.java:378) at com.affymetrix.igb.view.TrackView.addDependentAndEmptyTrack(TrackView.java:163) at com.affymetrix.igb.view.SeqMapView.addDependentAndEmptyTrack(SeqMapView.java:1191) at com.affymetrix.igb.view.SeqMapView.addAnnotationTracks(SeqMapView.java:1122) at com.affymetrix.igb.view.SeqMapView.addGlyphs(SeqMapView.java:894) at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:727) at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:652) at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:639) at com.affymetrix.igb.view.SeqMapView.seqSelectionChanged(SeqMapView.java:2091) at com.affymetrix.genometryImpl.GenometryModel.fireSeqSelectionEvent(GenometryModel.java:207) at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:187) at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:170) at com.affymetrix.igb.view.SeqGroupView$InitVersionWorker.done(SeqGroupView.java:929) at javax.swing.SwingWorker$5.run(Unknown Source) at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(Unknown Source) at sun.swing.AccumulativeRunnable.run(Unknown Source) at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(Unknown Source) at javax.swing.Timer.fireActionPerformed(Unknown Source) at javax.swing.Timer$DoPostEvent.run(Unknown Source) at java.awt.event.InvocationEvent.dispatch(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$000(Unknown Source) at java.awt.EventQueue$1.run(Unknown Source) at java.awt.EventQueue$1.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) |
| Assignee | Alyssa Gulledge [ alyssa ] | Hiral Vora [ hiralv ] |
| Assignee | Hiral Vora [ hiralv ] | Katharine Kubiak [ kkubiak ] |
| Assignee | Katharine Kubiak [ kkubiak ] | Alyssa Gulledge [ alyssa ] |
| Status | Open [ 1 ] | Resolved [ 5 ] |
| Assignee | Alyssa Gulledge [ alyssa ] | |
| Resolution | Fixed [ 1 ] |
| Status | Resolved [ 5 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] | |
| Status | Closed [ 6 ] | Reopened [ 4 ] |
| Assignee | Fuquan Wang [ fwang4 ] |
| Status | Reopened [ 4 ] | Resolved [ 5 ] |
| Assignee | Fuquan Wang [ fwang4 ] | |
| Resolution | Fixed [ 1 ] |
| Resolution | Fixed [ 1 ] | |
| Status | Resolved [ 5 ] | Reopened [ 4 ] |
| Status | Reopened [ 4 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] |
This is the bug Katie was seeing - the AWT null point