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  1. Bug Repository
  2. BUG-355

Error thrown in console when choosing species (Windows)

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      Windows v11235

      Every time I choose a species from either clicking on a picture or from the drop down box under 'Current Genome' the error below is thrown. I have tried resetting my preferences several times, clearing cache, and tested with different species and still get this error.

      Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
      at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.getDepth(AnnotationGlyphFactory.java:104)
      at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.addLeafsToTier(AnnotationGlyphFactory.java:114)
      at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.getViewModeGlyph(AnnotationGlyphFactory.java:579)
      at com.affymetrix.igb.view.TrackView.getTrack(TrackView.java:98)
      at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:836)
      at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:832)
      at com.affymetrix.igb.view.TrackView.addTierFor(TrackView.java:406)
      at com.affymetrix.igb.view.TrackView.addEmptyTierFor(TrackView.java:378)
      at com.affymetrix.igb.view.TrackView.addDependentAndEmptyTrack(TrackView.java:163)
      at com.affymetrix.igb.view.SeqMapView.addDependentAndEmptyTrack(SeqMapView.java:1191)
      at com.affymetrix.igb.view.SeqMapView.addAnnotationTracks(SeqMapView.java:1122)
      at com.affymetrix.igb.view.SeqMapView.addGlyphs(SeqMapView.java:894)
      at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:727)
      at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:652)
      at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:639)
      at com.affymetrix.igb.view.SeqMapView.seqSelectionChanged(SeqMapView.java:2091)
      at com.affymetrix.genometryImpl.GenometryModel.fireSeqSelectionEvent(GenometryModel.java:207)
      at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:187)
      at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:170)
      at com.affymetrix.igb.view.SeqGroupView$InitVersionWorker.done(SeqGroupView.java:929)
      at javax.swing.SwingWorker$5.run(Unknown Source)
      at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(Unknown Source)
      at sun.swing.AccumulativeRunnable.run(Unknown Source)
      at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(Unknown Source)
      at javax.swing.Timer.fireActionPerformed(Unknown Source)
      at javax.swing.Timer$DoPostEvent.run(Unknown Source)
      at java.awt.event.InvocationEvent.dispatch(Unknown Source)
      at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
      at java.awt.EventQueue.access$000(Unknown Source)
      at java.awt.EventQueue$1.run(Unknown Source)
      at java.awt.EventQueue$1.run(Unknown Source)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
      at java.awt.EventQueue.dispatchEvent(Unknown Source)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
      at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
      at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
      at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
      at java.awt.EventDispatchThread.run(Unknown Source)

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            kkubiak Katharine Kubiak (Inactive) created issue -
            kkubiak Katharine Kubiak (Inactive) made changes -
            Field Original Value New Value
            Assignee Alyssa Gulledge [ alyssa ]
            kkubiak Katharine Kubiak (Inactive) made changes -
            Description Windows v11235

            Every time I choose a species from either clicking on a picture or from the drop down box under 'Current Genome' the error below is thrown. I have tried reseting my preferences several times, clearing cache, and tested with different species and still get this error.

            Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
            at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.getDepth(AnnotationGlyphFactory.java:104)
            at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.addLeafsToTier(AnnotationGlyphFactory.java:114)
            at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.getViewModeGlyph(AnnotationGlyphFactory.java:579)
            at com.affymetrix.igb.view.TrackView.getTrack(TrackView.java:98)
            at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:836)
            at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:832)
            at com.affymetrix.igb.view.TrackView.addTierFor(TrackView.java:406)
            at com.affymetrix.igb.view.TrackView.addEmptyTierFor(TrackView.java:378)
            at com.affymetrix.igb.view.TrackView.addDependentAndEmptyTrack(TrackView.java:163)
            at com.affymetrix.igb.view.SeqMapView.addDependentAndEmptyTrack(SeqMapView.java:1191)
            at com.affymetrix.igb.view.SeqMapView.addAnnotationTracks(SeqMapView.java:1122)
            at com.affymetrix.igb.view.SeqMapView.addGlyphs(SeqMapView.java:894)
            at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:727)
            at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:652)
            at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:639)
            at com.affymetrix.igb.view.SeqMapView.seqSelectionChanged(SeqMapView.java:2091)
            at com.affymetrix.genometryImpl.GenometryModel.fireSeqSelectionEvent(GenometryModel.java:207)
            at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:187)
            at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:170)
            at com.affymetrix.igb.view.SeqGroupView$InitVersionWorker.done(SeqGroupView.java:929)
            at javax.swing.SwingWorker$5.run(Unknown Source)
            at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(Unknown Source)
            at sun.swing.AccumulativeRunnable.run(Unknown Source)
            at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(Unknown Source)
            at javax.swing.Timer.fireActionPerformed(Unknown Source)
            at javax.swing.Timer$DoPostEvent.run(Unknown Source)
            at java.awt.event.InvocationEvent.dispatch(Unknown Source)
            at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
            at java.awt.EventQueue.access$000(Unknown Source)
            at java.awt.EventQueue$1.run(Unknown Source)
            at java.awt.EventQueue$1.run(Unknown Source)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
            at java.awt.EventQueue.dispatchEvent(Unknown Source)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
            at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
            at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
            at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
            at java.awt.EventDispatchThread.run(Unknown Source)
            Windows v11235

            Every time I choose a species from either clicking on a picture or from the drop down box under 'Current Genome' the error below is thrown. I have tried resetting my preferences several times, clearing cache, and tested with different species and still get this error.

            Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
            at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.getDepth(AnnotationGlyphFactory.java:104)
            at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.addLeafsToTier(AnnotationGlyphFactory.java:114)
            at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.getViewModeGlyph(AnnotationGlyphFactory.java:579)
            at com.affymetrix.igb.view.TrackView.getTrack(TrackView.java:98)
            at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:836)
            at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:832)
            at com.affymetrix.igb.view.TrackView.addTierFor(TrackView.java:406)
            at com.affymetrix.igb.view.TrackView.addEmptyTierFor(TrackView.java:378)
            at com.affymetrix.igb.view.TrackView.addDependentAndEmptyTrack(TrackView.java:163)
            at com.affymetrix.igb.view.SeqMapView.addDependentAndEmptyTrack(SeqMapView.java:1191)
            at com.affymetrix.igb.view.SeqMapView.addAnnotationTracks(SeqMapView.java:1122)
            at com.affymetrix.igb.view.SeqMapView.addGlyphs(SeqMapView.java:894)
            at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:727)
            at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:652)
            at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:639)
            at com.affymetrix.igb.view.SeqMapView.seqSelectionChanged(SeqMapView.java:2091)
            at com.affymetrix.genometryImpl.GenometryModel.fireSeqSelectionEvent(GenometryModel.java:207)
            at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:187)
            at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:170)
            at com.affymetrix.igb.view.SeqGroupView$InitVersionWorker.done(SeqGroupView.java:929)
            at javax.swing.SwingWorker$5.run(Unknown Source)
            at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(Unknown Source)
            at sun.swing.AccumulativeRunnable.run(Unknown Source)
            at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(Unknown Source)
            at javax.swing.Timer.fireActionPerformed(Unknown Source)
            at javax.swing.Timer$DoPostEvent.run(Unknown Source)
            at java.awt.event.InvocationEvent.dispatch(Unknown Source)
            at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
            at java.awt.EventQueue.access$000(Unknown Source)
            at java.awt.EventQueue$1.run(Unknown Source)
            at java.awt.EventQueue$1.run(Unknown Source)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
            at java.awt.EventQueue.dispatchEvent(Unknown Source)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
            at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
            at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
            at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
            at java.awt.EventDispatchThread.run(Unknown Source)
            alyssa Alyssa Gulledge (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
            hiralv Hiral Vora (Inactive) made changes -
            Assignee Hiral Vora [ hiralv ] Katharine Kubiak [ kkubiak ]
            kkubiak Katharine Kubiak (Inactive) made changes -
            Assignee Katharine Kubiak [ kkubiak ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Open [ 1 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
            Key IGBC-169 BUG-355
            fwang4 Fuquan Wang (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Fuquan Wang [ fwang4 ]
            fwang4 Fuquan Wang (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Fuquan Wang [ fwang4 ]
            Resolution Fixed [ 1 ]
            richard Richard Linchangco (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Resolved [ 5 ] Reopened [ 4 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue relates to BUG-651 [ BUG-651 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Reopened [ 4 ] Closed [ 6 ]
            Resolution Fixed [ 1 ]

              People

              • Assignee:
                Unassigned
                Reporter:
                kkubiak Katharine Kubiak (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: