Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Fixed
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Labels:None
Description
Windows v11235
Every time I choose a species from either clicking on a picture or from the drop down box under 'Current Genome' the error below is thrown. I have tried resetting my preferences several times, clearing cache, and tested with different species and still get this error.
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.getDepth(AnnotationGlyphFactory.java:104)
at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.addLeafsToTier(AnnotationGlyphFactory.java:114)
at com.affymetrix.igb.viewmode.AnnotationGlyphFactory.getViewModeGlyph(AnnotationGlyphFactory.java:579)
at com.affymetrix.igb.view.TrackView.getTrack(TrackView.java:98)
at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:836)
at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:832)
at com.affymetrix.igb.view.TrackView.addTierFor(TrackView.java:406)
at com.affymetrix.igb.view.TrackView.addEmptyTierFor(TrackView.java:378)
at com.affymetrix.igb.view.TrackView.addDependentAndEmptyTrack(TrackView.java:163)
at com.affymetrix.igb.view.SeqMapView.addDependentAndEmptyTrack(SeqMapView.java:1191)
at com.affymetrix.igb.view.SeqMapView.addAnnotationTracks(SeqMapView.java:1122)
at com.affymetrix.igb.view.SeqMapView.addGlyphs(SeqMapView.java:894)
at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:727)
at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:652)
at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:639)
at com.affymetrix.igb.view.SeqMapView.seqSelectionChanged(SeqMapView.java:2091)
at com.affymetrix.genometryImpl.GenometryModel.fireSeqSelectionEvent(GenometryModel.java:207)
at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:187)
at com.affymetrix.genometryImpl.GenometryModel.setSelectedSeq(GenometryModel.java:170)
at com.affymetrix.igb.view.SeqGroupView$InitVersionWorker.done(SeqGroupView.java:929)
at javax.swing.SwingWorker$5.run(Unknown Source)
at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(Unknown Source)
at sun.swing.AccumulativeRunnable.run(Unknown Source)
at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(Unknown Source)
at javax.swing.Timer.fireActionPerformed(Unknown Source)
at javax.swing.Timer$DoPostEvent.run(Unknown Source)
at java.awt.event.InvocationEvent.dispatch(Unknown Source)
at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
at java.awt.EventQueue.access$000(Unknown Source)
at java.awt.EventQueue$1.run(Unknown Source)
at java.awt.EventQueue$1.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
at java.awt.EventQueue.dispatchEvent(Unknown Source)
at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.run(Unknown Source)
Attachments
Issue Links
- relates to
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BUG-651 Windows specific bugs
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- Closed
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