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  1. Bug Repository
  2. BUG-370

Remote search returns too many identical results

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            A remote search should not print out (in the table) every single hit if they have the same ID. Only a single hit on an ID should show - and it should be from the genome version currently loaded, from the refseq file (or the equivalent) if possible. Otherwise, whatever the first hit returned from the matching genome version will be fine.

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                is blocked by

                Task - A task that needs to be done. BUG-648 Search bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  alyssa Alyssa Gulledge (Inactive) created issue -
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  I think you are already working on it.

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                  hiralv Hiral Vora (Inactive) added a comment - I think you are already working on it.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Lance Frohman [ lfrohman ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  It's probably done already. Test it out.

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                  hiralv Hiral Vora (Inactive) added a comment - It's probably done already. Test it out.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Lance Frohman [ lfrohman ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  mostly done - still getting some doubling though...

                  load up A thal. search '07350' with search remotely checked. You get 6 hits to the currently loaded. The you get AV###, then BP6###, then BP807350 twice. Then DR207350 twice. Now, this is MUCH MUCH better - I just didn't know why sometimes there are doubles... If this is as good as it is going to get, it is fine though...

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - mostly done - still getting some doubling though... load up A thal. search '07350' with search remotely checked. You get 6 hits to the currently loaded. The you get AV###, then BP6###, then BP807350 twice. Then DR207350 twice. Now, this is MUCH MUCH better - I just didn't know why sometimes there are doubles... If this is as good as it is going to get, it is fine though...
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  When you do a remote search it might return duplicate in case of following.

                  1) Same gene can be present in more than one file.

                  2) Same gene can be present on more than one chromosome. (This only happens if you search whole genome)

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                  hiralv Hiral Vora (Inactive) added a comment - When you do a remote search it might return duplicate in case of following. 1) Same gene can be present in more than one file. 2) Same gene can be present on more than one chromosome. (This only happens if you search whole genome)
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
                  Key IGBC-42 BUG-370
                  Issue Type Improvement [ 4 ] Bug [ 1 ]
                  darius darius made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Darius Bost [ darius ]
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                  darius darius added a comment -

                  Passed 7.0 (11828)

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                  darius darius added a comment - Passed 7.0 (11828)
                  darius darius made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Darius Bost [ darius ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue is blocked by BUG-648 [ BUG-648 ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  still an issue. Open Homo sapiens, remote search 'egfr', get back 48 hits - and most of those looks like duplicates...

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - still an issue. Open Homo sapiens, remote search 'egfr', get back 48 hits - and most of those looks like duplicates...
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Please read my previous comment.

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                  hiralv Hiral Vora (Inactive) added a comment - Please read my previous comment.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  So this is returning a hit for every single file within the server... ok, sucks but ok.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - So this is returning a hit for every single file within the server... ok, sucks but ok.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  tkanapar Tarun Santosh (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Tarun Santosh [ tkanapar ]
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                  tkanapar Tarun Santosh (Inactive) added a comment -

                  Passed (7.0.4) 15389(Mac)

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                  tkanapar Tarun Santosh (Inactive) added a comment - Passed (7.0.4) 15389(Mac)
                  tkanapar Tarun Santosh (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Tarun Santosh [ tkanapar ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: