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  1. Bug Repository
  2. BUG-383

hide a tier from view in the sliced frames, change codon color, the hidden track reappears

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Minor
          • Resolution: Fixed
          • Labels:
            None

            Description

            Open any 2 tracks, select a gene so it appears in sliced view, then hide one track from the sliced view (right click menu hide). Open Pref > Other and change the color of a codon. The hidden track reappears.

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                relates to

                Task - A task that needs to be done. BUG-661 Sliced View

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  alyssa Alyssa Gulledge (Inactive) created issue -
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Nick Ren [ imnick ]
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                  imnick Nick Ren (Inactive) added a comment -

                  Can't reproduce.

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                  imnick Nick Ren (Inactive) added a comment - Can't reproduce.
                  imnick Nick Ren (Inactive) made changes -
                  Assignee Nick Ren [ imnick ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited

                  Load homo sapiens.
                  Load 'mrna' in addition to refseq.
                  Make single track.
                  Double click on a gene to zoom and select.
                  Open sliced view.
                  Both tracks appear in sliced view. From sliced view, right click the mrna track and select hide. Now, ANY state change than can affect the sliced view appearance (file>prefs>other>residue color, file>pref>other>ORF analyzer color, click on Analyze ORFs, changing the Slice buffer size) makes the hidden track reappear.

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                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited Load homo sapiens. Load 'mrna' in addition to refseq. Make single track. Double click on a gene to zoom and select. Open sliced view. Both tracks appear in sliced view. From sliced view, right click the mrna track and select hide. Now, ANY state change than can affect the sliced view appearance (file>prefs>other>residue color, file>pref>other>ORF analyzer color, click on Analyze ORFs, changing the Slice buffer size) makes the hidden track reappear.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r11638.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r11638.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
                  Key IGBC-119 BUG-383
                  darius darius made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Darius Bost [ darius ]
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                  darius darius added a comment -

                  Passed 7.0 (11860) Mac

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                  darius darius added a comment - Passed 7.0 (11860) Mac
                  darius darius made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Darius Bost [ darius ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-661 [ BUG-661 ]
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                  richard Richard Linchangco (Inactive) added a comment - - edited

                  FAILED V.13780, Mac, Java 1.7.0_10

                  As stated in Alyssa's comment, ANY state change will cause the hidden tier to reappear in 'Sliced View'.

                  State Changes Tested:

                  • 'Analyze ORFs' activation
                  • ANY color change for the track, ORFs, nucleotides
                  • Any change to 'Codon Display'
                    • Name and font size changes do not make the hidden tier to reappear.
                  • No errors or exceptions appeared in the Java console either.
                  Show
                  richard Richard Linchangco (Inactive) added a comment - - edited FAILED V.13780, Mac, Java 1.7.0_10 As stated in Alyssa's comment, ANY state change will cause the hidden tier to reappear in 'Sliced View'. State Changes Tested: 'Analyze ORFs' activation ANY color change for the track, ORFs, nucleotides Any change to 'Codon Display' Name and font size changes do not make the hidden tier to reappear. No errors or exceptions appeared in the Java console either.
                  richard Richard Linchangco (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Fuquan Wang [ fwang4 ]
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                  fwang4 Fuquan Wang (Inactive) added a comment -

                  Fixed in 13799

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                  fwang4 Fuquan Wang (Inactive) added a comment - Fixed in 13799
                  fwang4 Fuquan Wang (Inactive) made changes -
                  Assignee Fuquan Wang [ fwang4 ] Alyssa Gulledge [ alyssa ]
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                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13780, Mac, Java 1.7.0_10

                  Tested against all state change features.
                  Hidden track does not reappear.

                  Show
                  richard Richard Linchangco (Inactive) added a comment - Passed V.13780, Mac, Java 1.7.0_10 Tested against all state change features. Hidden track does not reappear.
                  richard Richard Linchangco (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  Assignee Alyssa Gulledge [ alyssa ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: