Details
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Type:
Task
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Status: Reopened (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Labels:None
Description
go to the galaxy home site and upload (from URL) one bed, one bam, one wig, one bigbed and one bigwig. Load them up and open an instance of IGB. Use "local" (look in the right side history at the bottom of each file box) to visualize each type and be sure that they work... you should get a pop up telling you that you need to hit 'load' to see the data. don't uncheck it and make sure it keeps reappearing. Then try again with it unchecked. There may be several popups during the bam visualization. If you need more details, come ask me...
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Activity
| Resolution | Fixed [ 1 ] | |
| Status | Closed [ 6 ] | Reopened [ 4 ] |
| Assignee | Philip Badzuh [ pbadzuh ] |
Please review for new information and add to our Galaxy testing story if you see fit. Then please re-close.
| Status | Reopened [ 4 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] |
| Resolution | Fixed [ 1 ] | |
| Status | Resolved [ 5 ] | Reopened [ 4 ] |
| Status | Open [ 1 ] | Resolved [ 5 ] |
| Assignee | Hiral Vora [ hiralv ] | |
| Resolution | Fixed [ 1 ] |
| Assignee | Alyssa Gulledge [ alyssa ] | Hiral Vora [ hiralv ] |
| Assignee | Hiral Vora [ hiralv ] | Alyssa Gulledge [ alyssa ] |
| Assignee | Alyssa Gulledge [ alyssa ] | Hiral Vora [ hiralv ] |
| Assignee | Katharine Kubiak [ kkubiak ] | Alyssa Gulledge [ alyssa ] |
| Comment |
[ Passed Windows v11716 When uploading to Galaxy from a desktop file: I loaded one bed, one bam, one wig, one bigbed and one bigwig and used the "local" button to visualize each in IGB. ] |
Passed Windows v11716
Works fine when uploading to Galaxy from a desktop file (I loaded one bed, one bam, one wig, one bigbed and one bigwig and used the "local" button to visualize each in IGB).
When uploading to Galaxy from a URL I get an error within Galaxy because there is a username and password for the quickload. For example I pasted this link:
http://www.igbquickload.org/cyto/A_thaliana_Jun_2009/ngs/cyto_processed/BA3.bed
into the "URL/Text:" box for uploading a file and I get this error:
"An error occurred running this job: Enter username for By invitation only at www.igbquickload.org: Unable to fetch http://www.igbquickload.org/cyto/A_thaliana_Jun_2009/ngs/cyto_processed/BA3.bed
EOF when reading a line"
There is no where to put in a username and password.
| Description | go to the galaxy home site and upload (from URL) one bed one bam one wig one bigbed and one bigwig. Load them up and open an instance of IGB. Use "local" (look in the right side history at the bottom of each file box) to visualize each type and be sure that they work... you should get a pop up telling you that you need to hit 'load' to see the data. don't uncheck it and make sure it keeps reappearing. Then try again with it unchecked. There may be several popups during the bam visualization. If you need more details, come ask me... | go to the galaxy home site and upload (from URL) one bed, one bam, one wig, one bigbed and one bigwig. Load them up and open an instance of IGB. Use "local" (look in the right side history at the bottom of each file box) to visualize each type and be sure that they work... you should get a pop up telling you that you need to hit 'load' to see the data. don't uncheck it and make sure it keeps reappearing. Then try again with it unchecked. There may be several popups during the bam visualization. If you need more details, come ask me... |
| Field | Original Value | New Value |
|---|---|---|
| Description | go to the galaxy home site and upload (from URL) one bed one bam and one wig. Load them up and open an instance of IGB. Use "local" (look in the right side history at the bottom of each file box) to visualize each type and be sure that they work... you should get a pop up telling you that you need to hit 'load' to see the data. don't uncheck it and make sure it keeps reappearing. Then try again with it unchecked. There may be several popups during the bam visualization. If you need more details, come ask me... | go to the galaxy home site and upload (from URL) one bed one bam one wig one bigbed and one bigwig. Load them up and open an instance of IGB. Use "local" (look in the right side history at the bottom of each file box) to visualize each type and be sure that they work... you should get a pop up telling you that you need to hit 'load' to see the data. don't uncheck it and make sure it keeps reappearing. Then try again with it unchecked. There may be several popups during the bam visualization. If you need more details, come ask me... |
notes from Dan:
Look at github for the tests and run testing code.