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  1. Bug Repository
  2. BUG-428

When removing a desktop or URL file exception is thrown

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            Windows v11868

            Tested on several file types, both desktop and URL files. To reproduce: drag in a file (no need to load data) then click the red x to delete and select yes. This is when the exception is thrown.

            Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
            at com.affymetrix.igb.shared.StyledJTable.setComponentBackground(StyledJTable.java:117)
            at com.affymetrix.igb.shared.StyledJTable.prepareRenderer(StyledJTable.java:103)
            at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.paintCell(Unknown Source)
            at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.a(Unknown Source)
            at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.paint(Unknown Source)
            at com.jidesoft.plaf.basic.BasicJideTableUI.paint(Unknown Source)
            at javax.swing.plaf.ComponentUI.update(Unknown Source)
            at javax.swing.JComponent.paintComponent(Unknown Source)
            at javax.swing.JComponent.paint(Unknown Source)
            at javax.swing.JComponent.paintChildren(Unknown Source)
            at javax.swing.JComponent.paint(Unknown Source)
            at javax.swing.JViewport.paint(Unknown Source)
            at javax.swing.JComponent.paintChildren(Unknown Source)
            at javax.swing.JComponent.paint(Unknown Source)
            at javax.swing.JComponent.paintChildren(Unknown Source)
            at javax.swing.JComponent.paint(Unknown Source)
            at javax.swing.JComponent.paintChildren(Unknown Source)
            at javax.swing.JComponent.paint(Unknown Source)
            at javax.swing.JComponent.paintChildren(Unknown Source)
            at javax.swing.JSplitPane.paintChildren(Unknown Source)
            at javax.swing.JComponent.paint(Unknown Source)
            at com.affymetrix.igb.window.service.def.JTabbedTrayPane.paint(JTabbedTrayPane.java:627)
            at javax.swing.JComponent.paintChildren(Unknown Source)
            at javax.swing.JComponent.paint(Unknown Source)
            at javax.swing.JComponent.paintChildren(Unknown Source)
            at javax.swing.JComponent.paint(Unknown Source)
            at javax.swing.JLayeredPane.paint(Unknown Source)
            at javax.swing.JComponent.paintChildren(Unknown Source)
            at javax.swing.JComponent.paintToOffscreen(Unknown Source)
            at javax.swing.RepaintManager$PaintManager.paintDoubleBuffered(Unknown Source)
            at javax.swing.RepaintManager$PaintManager.paint(Unknown Source)
            at javax.swing.BufferStrategyPaintManager.paint(Unknown Source)
            at javax.swing.RepaintManager.paint(Unknown Source)
            at javax.swing.JComponent.paint(Unknown Source)
            at java.awt.GraphicsCallback$PaintCallback.run(Unknown Source)
            at sun.awt.SunGraphicsCallback.runOneComponent(Unknown Source)
            at sun.awt.SunGraphicsCallback.runComponents(Unknown Source)
            at java.awt.Container.paint(Unknown Source)
            at java.awt.Window.paint(Unknown Source)
            at javax.swing.RepaintManager.paintDirtyRegions(Unknown Source)
            at javax.swing.RepaintManager.paintDirtyRegions(Unknown Source)
            at javax.swing.RepaintManager.prePaintDirtyRegions(Unknown Source)
            at javax.swing.RepaintManager.access$700(Unknown Source)
            at javax.swing.RepaintManager$ProcessingRunnable.run(Unknown Source)
            at java.awt.event.InvocationEvent.dispatch(Unknown Source)
            at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
            at java.awt.EventQueue.access$000(Unknown Source)
            at java.awt.EventQueue$1.run(Unknown Source)
            at java.awt.EventQueue$1.run(Unknown Source)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
            at java.awt.EventQueue.dispatchEvent(Unknown Source)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
            at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
            at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
            at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
            at java.awt.EventDispatchThread.run(Unknown Source)

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-651 Windows specific bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

                  Descending order - Click to sort in ascending order
                  Hide
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed Windows v11947

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed Windows v11947
                  Hide
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                  anuj Anuj Puram (Inactive) added a comment -

                  it was related to Windows OS only
                  Fixed in r11935

                  Show
                  anuj Anuj Puram (Inactive) added a comment - it was related to Windows OS only Fixed in r11935
                  Hide
                  Permalink
                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Additional exception when File > Open...

                  Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
                  at com.affymetrix.genometryImpl.util.SeqUtils.addInvertChildren(SeqUtils.java:211)
                  at com.affymetrix.genometryImpl.util.SeqUtils.inverse(SeqUtils.java:189)
                  at com.affymetrix.igb.shared.AbstractViewModeGlyph.initUnloaded(AbstractViewModeGlyph.java:304)
                  at com.affymetrix.igb.shared.TierGlyph.initUnloaded(TierGlyph.java:216)
                  at com.affymetrix.igb.view.TrackView.addTierFor(TrackView.java:411)
                  at com.affymetrix.igb.view.TrackView.addEmptyTierFor(TrackView.java:374)
                  at com.affymetrix.igb.view.TrackView.addDependentAndEmptyTrack(TrackView.java:163)
                  at com.affymetrix.igb.view.SeqMapView.addDependentAndEmptyTrack(SeqMapView.java:1304)
                  at com.affymetrix.igb.view.SeqMapView.addAnnotationTracks(SeqMapView.java:1235)
                  at com.affymetrix.igb.view.SeqMapView.addGlyphs(SeqMapView.java:998)
                  at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:815)
                  at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:737)
                  at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:723)
                  at com.affymetrix.igb.view.SeqMapView.dataRemoved(SeqMapView.java:712)
                  at com.affymetrix.igb.view.load.GeneralLoadView$8.finished(GeneralLoadView.java:677)
                  at com.affymetrix.genometryImpl.thread.CThreadWorker.done(CThreadWorker.java:41)
                  at javax.swing.SwingWorker$5.run(Unknown Source)
                  at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(Unknown Source)
                  at sun.swing.AccumulativeRunnable.run(Unknown Source)
                  at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(Unknown Source)
                  at javax.swing.Timer.fireActionPerformed(Unknown Source)
                  at javax.swing.Timer$DoPostEvent.run(Unknown Source)
                  at java.awt.event.InvocationEvent.dispatch(Unknown Source)
                  at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
                  at java.awt.EventQueue.access$000(Unknown Source)
                  at java.awt.EventQueue$1.run(Unknown Source)
                  at java.awt.EventQueue$1.run(Unknown Source)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
                  at java.awt.EventQueue.dispatchEvent(Unknown Source)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
                  at java.awt.EventDispatchThread.run(Unknown Source)

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Additional exception when File > Open... Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException at com.affymetrix.genometryImpl.util.SeqUtils.addInvertChildren(SeqUtils.java:211) at com.affymetrix.genometryImpl.util.SeqUtils.inverse(SeqUtils.java:189) at com.affymetrix.igb.shared.AbstractViewModeGlyph.initUnloaded(AbstractViewModeGlyph.java:304) at com.affymetrix.igb.shared.TierGlyph.initUnloaded(TierGlyph.java:216) at com.affymetrix.igb.view.TrackView.addTierFor(TrackView.java:411) at com.affymetrix.igb.view.TrackView.addEmptyTierFor(TrackView.java:374) at com.affymetrix.igb.view.TrackView.addDependentAndEmptyTrack(TrackView.java:163) at com.affymetrix.igb.view.SeqMapView.addDependentAndEmptyTrack(SeqMapView.java:1304) at com.affymetrix.igb.view.SeqMapView.addAnnotationTracks(SeqMapView.java:1235) at com.affymetrix.igb.view.SeqMapView.addGlyphs(SeqMapView.java:998) at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:815) at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:737) at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:723) at com.affymetrix.igb.view.SeqMapView.dataRemoved(SeqMapView.java:712) at com.affymetrix.igb.view.load.GeneralLoadView$8.finished(GeneralLoadView.java:677) at com.affymetrix.genometryImpl.thread.CThreadWorker.done(CThreadWorker.java:41) at javax.swing.SwingWorker$5.run(Unknown Source) at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(Unknown Source) at sun.swing.AccumulativeRunnable.run(Unknown Source) at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(Unknown Source) at javax.swing.Timer.fireActionPerformed(Unknown Source) at javax.swing.Timer$DoPostEvent.run(Unknown Source) at java.awt.event.InvocationEvent.dispatch(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$000(Unknown Source) at java.awt.EventQueue$1.run(Unknown Source) at java.awt.EventQueue$1.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source)
                  Hide
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  I am still getting this same error on Windows v11922

                  To reproduce (3 different ways):

                  1. File > Open > choose file
                  2. Drag and drop in a file that you have saved
                  3. Drag and drop a file from a URL

                  I get the same error for all three.

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - I am still getting this same error on Windows v11922 To reproduce (3 different ways): 1. File > Open > choose file 2. Drag and drop in a file that you have saved 3. Drag and drop a file from a URL I get the same error for all three.
                  Hide
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                  anuj Anuj Puram (Inactive) added a comment - - edited

                  could not reproduce in r11875 on Mac

                  Show
                  anuj Anuj Puram (Inactive) added a comment - - edited could not reproduce in r11875 on Mac

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      kkubiak Katharine Kubiak (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: