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  1. Bug Repository
  2. BUG-443

Search Tab: When searching for residues an exception is thrown and main view changes

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      Windows v11949

      Exception thrown and half of the main view is blacked out and labels disappear.

      To reproduce:
      A_thal_2009
      Search tab > Residues > in any Chr > for any residue

      Exception:
      Exception in thread "AWT-EventQueue-0" java.util.ConcurrentModificationException
      at java.util.AbstractList$Itr.checkForComodification(Unknown Source)
      at java.util.AbstractList$Itr.next(Unknown Source)
      at com.affymetrix.igb.shared.FasterExpandPacker.pack(FasterExpandPacker.java:224)
      at com.affymetrix.genoviz.bioviews.Glyph.pack(Glyph.java:628)
      at com.affymetrix.igb.shared.TierGlyph.pack(TierGlyph.java:420)
      at com.affymetrix.igb.tiers.AffyTieredMap.packTiers(AffyTieredMap.java:187)
      at com.affymetrix.igb.tiers.AffyTieredMap.packTiers(AffyTieredMap.java:178)
      at com.affymetrix.igb.tiers.AffyLabelledTierMap.packTiers(AffyLabelledTierMap.java:167)
      at com.affymetrix.igb.tiers.AffyTieredMap.repack(AffyTieredMap.java:162)
      at com.affymetrix.igb.view.SeqMapView.setAnnotatedSeq(SeqMapView.java:806)
      at com.affymetrix.igb.action.LoadResidueAction$1.run(LoadResidueAction.java:88)
      at java.awt.event.InvocationEvent.dispatch(Unknown Source)
      at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
      at java.awt.EventQueue.access$000(Unknown Source)
      at java.awt.EventQueue$1.run(Unknown Source)
      at java.awt.EventQueue$1.run(Unknown Source)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
      at java.awt.EventQueue.dispatchEvent(Unknown Source)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
      at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
      at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
      at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
      at java.awt.EventDispatchThread.run(Unknown Source)

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              • Assignee:
                Unassigned
                Reporter:
                kkubiak Katharine Kubiak (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: