Preferences > 'Other Options' Tab

'Coordinates' Panel:

• Background and Foreground colors stay white and black, respectively, regardless of trying to change them via the color swatches.
• Number format works as expected
• Passed V.13588, Mac, Java 1.06.0_37

'Residue Colors' Panel:

• Passed V.13588, Mac, Java 1.06.0_37

'ORF Analyzer (Sliced View tab)' Panel:

• Passed V.13588, Mac, Java 1.06.0_37

'Edge Match'

• Passed V.13588, Mac, Java 1.06.0_37

'Activate' Check Boxes:

• Passed V.13588, Mac, Java 1.06.0_37
• 'Auto Change to Depth Graph or Zoom Out' check box no longer there

Windows v11987

Issues:

• Pref > Other Options: Coordinate BG and FG are not synchronized with right click > Change > BG or FG IGBC-313
• Pref > Other Options: Activating 'Auto Change to depth graph or zoom out' should be ON zoom out? IGBC-314

Passed v10042 on Mac

Coordinates:

• Same as Windows

Residue Colors:

• Color adjustments do not auto-update instead the color gets updated once the coordinates are clicked on the IGB.

ORF Analyzer:

• Colors gets updates accurately.

Edge Match Color:

• Edge Match color gets updated accurately.

Checkboxes:

• Ask Before Exit works fine.
• Did not confirm before loading a large dataset as in Windows.
• Confirm Before delete works fine
• Show Zoom Stripe label works fine
• Show Zoom Stripe works fine.
• Show Collapse option Works fine.
• Auto Change view for BAM/SAM has an issue similar to that in Windows

Anuj - I am assigning this to you so that you can see several issues that you missed...

Notably, if you change any color and select 'more colors' a significant error is thrown to console. Also, the autoload ALWAYS chifts the image to graph when loading very large amounts of BAM data - even if the option is off. Also, the failure of the warning about loading too much data should have been noted in your GUI test notes. Some of the bugs Katy has reported are specific to windows, but there are many Mac issues that have come up that you missed. Please be sure to check with me if there is a function that you are unsure of how to test (ie you don't know what it should do, or what it should look like if it is working).

Passed v9967 Windows

Coordinates:

• BG and FG colors updates and synchronized with rt click>change BG/FG color
• Number format

Residue Colors:

• Residue color can be changed but has issue with auto-update
  reported as bug (BUG-241)

ORF Analyzer:

• Colors do not auto update
  reported as bug (IGBB-275)

Edge Match:

• Color auto-updates
• Changing the color more than once throws error
  reported as bug (IGBB-276)

Activate:

• Ask before exit
• Did not confirm before loading large data set
  reported as bug (IGBB-271)
• Confirm before delete
• Show zoom stripe label
• Show zoom stripe
• Show collapse option
• Reset preferences
• Auto change view for BAM/SAM auto changes the view even when not activated
  reported as bug (IGBB-277)