v10003 on Mac

open file option
-it loads the files correctly if the are compatable to IGB
-When I tried to open a word document file it does not alert me saying that incompatible fie to IGB and tries to load the file instead of restricting it.

open URL option

-It restricts the invalid URLs
-Loads the URLs correctly

open Reference Sequence option

-it also loads the Reference Sequences correctly

Open file:
-set File Format to 'All Files' and loaded a pdf, and a gif (IGBB-326)
-set format to limits and correctly found the right formats
-opened each selected file properly.
-left species and genome as unknown, opened correctly
-set species only, opened as unknown genome within proper species (correctly)
-set species and genome, opened properly

Open Ref. Seq:
-set File Format to 'All Files' and loaded a pdf, and a gif (IGBB-326)
-set format to limits and correctly found the right formats
-opened each selected file properly.
-left species and genome as unknown, opened correctly
-set species only, opened as unknown genome within proper species (correctly)
-set species and genome, opened properly

Open URL:
-Open correct URL with correct password, and it worked (http://transvar.org/illumina/tophat_3_processed/CoolHT2.bed with correct information)
-open correct URL with incorrect password and THEN cancel throws and error (IGBB-325)
-open http://transvar.org/illumina/tophat_3_processed (the index page for many files) with correct information, and it throws and error (IGBB-324)
-open random letters and numbers or even a correct but no data site ie www.google.com, and it is properly rejected
-left species and genome as unknown, opened correctly
-set species only, opened as unknown genome within proper species (correctly)
-set species and genome, opened properly

Windows v10137

Open file:

• Opened each selected file
• Set species and genome both unknown
• Set species and unknown genome
• Set species and known genome

Open URL:

• Correct URL with password (http://transvar.org/illumina/tophat_3_processed/CoolHT2.bed)
• Open correct URL with incorrect password and THEN cancel throws and error (IGBB-325)
• Open http://transvar.org/illumina/tophat_3_processed (the index page for many files) with correct information, and it throws and error (IGBB-324)
• Open random letters and numbers or even a correct but no data site ie www.google.com, and it is properly rejected
• Species and genome as unknown
• Set species only and unknown genome
• Set species and genome

Open Ref. Seq:

• Opened each selected file
• Species and genome as unknown
• Set species only and unknown genome
• Set species and genome

Passed Windows v12042

File > Open Menus

'Open file...' (All files obtained from bioviz.org/filerepo/):

• PASSED V.13526, Mac, Java 1.06_037
• Graph files-PASSED (.bw, .bigwig, .gr, .bedgraph, .bgr, .bar, .sgr, .wig)
• -bigwig and bw are the same(bw abbreviates bigwig)
• -chp is a legacy file(old) and is rarely used
• PSL files-PASSED (.psl, .pslx, .link.psl)
• -psl3 is not a format we have and is rarely used
• Regions files-These are legacy files(old) and are rarely used
• SAM files-PASSED
• Scored Interval files-PASSED (.egr, .egr.txt)
• -sin is a legacy file(old) and is rarely used
• Scored Map files-These are legacy files(old) and are rarely used
• VCF files-PASSED
• All files tested as Unknown species/Unknown genome, Known species/Unknown genome, Known species/genome
• File format set to Known Types, only recognizing the valid files and nothing else

'Open URL...' (http://bioviz.org/filerepo/aligned.bam):

• PASSED V.13526, Mac, Java 1.06.0_37
• Opens data properly
• Open index page (http://bioviz.org/filerepo/) and it opens a window displaying: 'Format not recognized for file: http://bioviz.org/filerepo/' which is correct
• Input random website(www.google.com) and it opens a window displaying: 'The URL www.google.com is not valid. Please enter a valid URL' which is correct
• Input random letters or numbers and opens same window as randome website which is correct
• Opened URL with Unknown species/genome, Known species/Unknown genome, Known species/genome

'Open Reference Sequence...':

• PASSED V.13526, Mac, Java 1.06.0_37
• File formats- PASSED (.2bit, .bnib, .fasta, .fa, .fas)
• Opened with Unknown species/genome, Known species/Unknown genome, Known species/genome