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  1. Bug Repository
  2. BUG-458

Indexed GFF file does not partial load correctly

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Minor
    • Resolution: Fixed
    • Labels:
      None

      Description

      • open H sapiens
      • Save, then drag in the IGIS Gene Models.GFF file (attached. Make sure to save the .tbi file to the same location as the main file.).
      • zoom in until you have 1/2 of a gene showing on screen (make sure the other half is out of the field of view)
      • hit load data. See that the IGIS models loaded.
      • now zoom out, you will see the IGIS models end at the black and sometimes a single line extends into the grey, unloaded area. The exons on the ends are not showing.
      • while zoomed out, hit Load Data again

      this test passes if the rest of the exons load onto the 'parent' line. This fails if they are drawn as a new line

        Attachments

        1. FULL.png
          170 kB
        2. IGIS Gene Models.gff.gz
          5.53 MB
        3. IGIS Gene Models.gff.gz.tbi
          601 kB
        4. image.png
          288 kB
        5. image 2.png
          227 kB
        6. partial.model.png
          173 kB
        7. PARTIAL.png
          170 kB

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              People

              • Assignee:
                Unassigned
                Reporter:
                alyssa Alyssa Gulledge (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: