Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Minor
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Resolution: Fixed
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Labels:None
Description
make sure IGB can handle VCF files
Attachments
Issue Links
- relates to
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BUG-622 File format issues
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Assignee | Lance Frohman [ lfrohman ] | Michael Lawrence [ michafla ] |
| Assignee | Michael Lawrence [ michafla ] | Alyssa Gulledge [ alyssa ] |
| Attachment | ALL.chr20.vqsr_2of5_union_200_sites_for_validation.20101123.indels.genotypes.vcf.gz [ 11097 ] | |
| Attachment | ALL.chr20.vqsr_2of5_union_200_sites_for_validation.20101123.indels.genotypes.vcf.gz.tbi [ 11098 ] |
| Assignee | Alyssa Gulledge [ alyssa ] | Katharine Kubiak [ kkubiak ] |
| Assignee | Katharine Kubiak [ kkubiak ] | Lance Frohman [ lfrohman ] |
| Assignee | Lance Frohman [ lfrohman ] | Katharine Kubiak [ kkubiak ] |
| Status | Open [ 1 ] | Closed [ 6 ] |
| Assignee | Katharine Kubiak [ kkubiak ] | |
| Resolution | Fixed [ 1 ] |
| Resolution | Fixed [ 1 ] | |
| Status | Closed [ 6 ] | Reopened [ 4 ] |
| Summary | error with no VCF plugin | Handle VCF files without plug in |
| Reporter | Lance Frohman [ lfrohman ] | Alyssa Gulledge [ alyssa ] |
| Description | I rebuilt the trunk fresh, and the VCF plugin is apparently not loaded. Despite that, the dbSNP track showed up from our Quickload site. When I tried to load it, I got "SEVERE: no handler for file type vcf", which was not surprising. However, IGB keeps working (progress bar keeps going) forever after that, and the cancel button does not stop it. | make sure IGB can handle VCF files |
| Status | Reopened [ 4 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] |