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  1. Bug Repository
  2. BUG-507

NPE, if fixed causes looping

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Minor
          • Resolution: Fixed
          • Labels:
            None

            Description

            • Load h_sapiens
            • chr1
            • Data Access tab selected
            • select top 3 icons (forward strand) at 145,413,190 (see attached)
            • select Selection Info tab
            • select Sliced View tab

            it throws a NPE. I fixed it in two places

            GileTypeHolder.java
            public FileTypeHandler getFileTypeHandlerForURI(String uri) {
            if (uri == null)

            { // added code return null; // added code }

            // code
            . . .

            and

            GeneralUtils.java
            public static String stripEndings(String name) {
            for (int i=0; i<compression_endings.length; i++) {
            String ending = compression_endings[i].toLowerCase();
            if (name != null && name.toLowerCase().endsWith(ending)) { // "name != null && " added

            when I make these changes, then try again, the Alt Splice View loops

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-661 Sliced View

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
                  lfrohman Lance Frohman (Inactive) created issue -
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Attachment load.PNG [ 11090 ]
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Fuquan Wang [ fwang4 ]
                  fwang4 Fuquan Wang (Inactive) made changes -
                  Assignee Fuquan Wang [ fwang4 ] Katharine Kubiak [ kkubiak ]
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Katharine Kubiak [ kkubiak ]
                  Resolution Fixed [ 1 ]
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
                  Key IGBC-168 BUG-507
                  hiralv Hiral Vora (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-689 [ BUG-689 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-689 [ BUG-689 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-661 [ BUG-661 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      lfrohman Lance Frohman (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: