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  1. Bug Repository
  2. BUG-523

Loading tbi indexed file from the web throws npe

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            http://bioviz.org/filerepo/

            java.lang.NullPointerException
            at com.affymetrix.genometryImpl.symloader.TbiZoomSymLoader.getRefNo(TbiZoomSymLoader.java:128)
            at com.affymetrix.genometryImpl.symloader.TbiZoomSymLoader.getBinIter(TbiZoomSymLoader.java:149)
            at com.affymetrix.genometryImpl.symloader.TbiZoomSymLoader.getBinIter(TbiZoomSymLoader.java:66)
            at com.affymetrix.genometryImpl.symloader.IndexZoomSymLoader.getRegion(IndexZoomSymLoader.java:64)
            at com.affymetrix.igb.shared.IndexedSemanticZoomGlyphFactory$IndexedSemanticZoomGlyph.getSummaryGlyph(IndexedSemanticZoomGlyphFactory.java:145)
            at com.affymetrix.igb.viewmode.GzIndexedSemanticZoomGlyphFactory$GzIndexedSemanticZoomGlyph.getSummaryGlyph(GzIndexedSemanticZoomGlyphFactory.java:84)
            at com.affymetrix.igb.shared.IndexedSemanticZoomGlyphFactory$IndexedSemanticZoomGlyph.getGlyph(IndexedSemanticZoomGlyphFactory.java:174)
            at com.affymetrix.igb.shared.SemanticZoomGlyphFactory.getViewModeGlyph(SemanticZoomGlyphFactory.java:39)
            at com.affymetrix.igb.shared.IndexedSemanticZoomGlyphFactory.getViewModeGlyph(IndexedSemanticZoomGlyphFactory.java:69)
            at com.affymetrix.igb.view.TrackView.getTrack(TrackView.java:98)
            at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:926)
            at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:922)
            at com.affymetrix.igb.view.TrackView.addTierFor(TrackView.java:409)
            at com.affymetrix.igb.view.TrackView.addEmptyTierFor(TrackView.java:379)
            at com.affymetrix.igb.view.load.GeneralLoadView$7.runInBackground(GeneralLoadView.java:596)
            at com.affymetrix.genometryImpl.thread.CThreadWorker.doInBackground(CThreadWorker.java:74)
            at javax.swing.SwingWorker$1.call(SwingWorker.java:277)
            at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
            at java.util.concurrent.FutureTask.run(FutureTask.java:138)
            at javax.swing.SwingWorker.run(SwingWorker.java:316)
            at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
            at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
            at java.lang.Thread.run(Thread.java:680)

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-622 File format issues

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
                  hiralv Hiral Vora (Inactive) created issue -
                  lfrohman Lance Frohman (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Lance Frohman [ lfrohman ] Hiral Vora [ hiralv ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Lance Frohman [ lfrohman ]
                  lfrohman Lance Frohman (Inactive) made changes -
                  Assignee Lance Frohman [ lfrohman ] Hiral Vora [ hiralv ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Hiral Vora [ hiralv ]
                  Resolution Fixed [ 1 ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
                  Key IGBC-336 BUG-523
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Priority Blocker [ 1 ] Major [ 3 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-622 [ BUG-622 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      hiralv Hiral Vora (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: