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  1. Bug Repository
  2. BUG-523

Loading tbi indexed file from the web throws npe

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      http://bioviz.org/filerepo/

      java.lang.NullPointerException
      at com.affymetrix.genometryImpl.symloader.TbiZoomSymLoader.getRefNo(TbiZoomSymLoader.java:128)
      at com.affymetrix.genometryImpl.symloader.TbiZoomSymLoader.getBinIter(TbiZoomSymLoader.java:149)
      at com.affymetrix.genometryImpl.symloader.TbiZoomSymLoader.getBinIter(TbiZoomSymLoader.java:66)
      at com.affymetrix.genometryImpl.symloader.IndexZoomSymLoader.getRegion(IndexZoomSymLoader.java:64)
      at com.affymetrix.igb.shared.IndexedSemanticZoomGlyphFactory$IndexedSemanticZoomGlyph.getSummaryGlyph(IndexedSemanticZoomGlyphFactory.java:145)
      at com.affymetrix.igb.viewmode.GzIndexedSemanticZoomGlyphFactory$GzIndexedSemanticZoomGlyph.getSummaryGlyph(GzIndexedSemanticZoomGlyphFactory.java:84)
      at com.affymetrix.igb.shared.IndexedSemanticZoomGlyphFactory$IndexedSemanticZoomGlyph.getGlyph(IndexedSemanticZoomGlyphFactory.java:174)
      at com.affymetrix.igb.shared.SemanticZoomGlyphFactory.getViewModeGlyph(SemanticZoomGlyphFactory.java:39)
      at com.affymetrix.igb.shared.IndexedSemanticZoomGlyphFactory.getViewModeGlyph(IndexedSemanticZoomGlyphFactory.java:69)
      at com.affymetrix.igb.view.TrackView.getTrack(TrackView.java:98)
      at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:926)
      at com.affymetrix.igb.view.SeqMapView.getTrack(SeqMapView.java:922)
      at com.affymetrix.igb.view.TrackView.addTierFor(TrackView.java:409)
      at com.affymetrix.igb.view.TrackView.addEmptyTierFor(TrackView.java:379)
      at com.affymetrix.igb.view.load.GeneralLoadView$7.runInBackground(GeneralLoadView.java:596)
      at com.affymetrix.genometryImpl.thread.CThreadWorker.doInBackground(CThreadWorker.java:74)
      at javax.swing.SwingWorker$1.call(SwingWorker.java:277)
      at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
      at java.util.concurrent.FutureTask.run(FutureTask.java:138)
      at javax.swing.SwingWorker.run(SwingWorker.java:316)
      at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
      at java.lang.Thread.run(Thread.java:680)

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              • Assignee:
                Unassigned
                Reporter:
                hiralv Hiral Vora (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: