Richard Linchangco (Inactive) added a comment - 02/Jan/13 11:36 AM Passed V.13840, Branch, Mac, Java 1.7.0_10 Each step of the tutorial functions properly, without throwing any type of errors or exceptions in the Java console. The tutorial is interactive and provides description and instruction in red text at the tope of the main viewer and dashed red boxes.

Katharine Kubiak (Inactive) added a comment - 10/Jul/12 9:05 AM Passed Windows v12365

Hiral Vora (Inactive) added a comment - 10/Jul/12 8:26 AM Updated tutorial.

Lance Frohman (Inactive) added a comment - 10/Jul/12 7:07 AM yes, this is a problem with the tutorial itself (a json file), not the tutorial code.

Katharine Kubiak (Inactive) added a comment - 10/Jul/12 5:39 AM Windows v12354 The tutorial runs fine, but here is what prints in the console (same message from Lance's original post, so not sure if this is still an issue): Jul 10, 2012 9:36:44 AM com.gene.igbscript.IGBScriptEngine doActions INFO: line: homescreen Jul 10, 2012 9:36:45 AM com.affymetrix.igb.IGB getViewByDisplayName SEVERE: com.affymetrix.igb.IGB.getView() failed for "{" com.affymetrix.igb.IGB.getView() failed for " {" Jul 10, 2012 9:36:45 AM com.affymetrix.igb.IGB getViewByDisplayName SEVERE: com.affymetrix.igb.IGB.getView() failed for "tab" Jul 10, 2012 9:36:45 AM com.affymetrix.igb.IGB getViewByDisplayName SEVERE: com.affymetrix.igb.IGB.getView() failed for "tab" Jul 10, 2012 9:36:45 AM com.affymetrix.igb.IGB getViewByDisplayName SEVERE: com.affymetrix.igb.IGB.getView() failed for "} " MainWorkspaceManager:itemStateChanged hit Jul 10, 2012 9:37:09 AM com.affymetrix.genometryImpl.das2.Das2VersionedSource getInputStream INFO: Das2 Types Request : http://bioviz.org/das2/genome/A_thaliana_Jun_2009/types Jul 10, 2012 9:37:10 AM com.affymetrix.genometryImpl.das2.Das2VersionedSource getInputStream INFO: Das2 Types Request : http://igbquickload.org/das2/genome/A_thaliana_Jun_2009/types log4j:WARN No appenders could be found for logger (org.broad.tribble.util.SeekableHTTPStream). log4j:WARN Please initialize the log4j system properly. Jul 10, 2012 9:37:17 AM com.gene.igbscript.IGBScriptEngine doActions INFO: line: setZoomStripePosition 16267374 BED annot count: 9263 BED annot count: 5558 BED annot count: 6907 BED annot count: 5355 BED annot count: 8088 BED annot count: 88 BED annot count: 122 Jul 10, 2012 9:37:30 AM com.affymetrix.genometryImpl.das2.Das2ServerType GetPartialFASTADas2Residues INFO: response is in raw format, parsing... Completed loading sequence for chr1 : 49 - 89 from Bioviz DAS2

Anuj Puram (Inactive) added a comment - 09/Jul/12 11:46 AM Fixed in r12348

Hiral Vora (Inactive) added a comment - 29/Jun/12 6:41 AM I checked it on 6.7. It throws the same error there too. But it's working fine there.

Lance Frohman (Inactive) added a comment - 28/Jun/12 6:56 AM It looks like there is an error in the script itself. David Norris was working on this last. I will ask him what the status is.