Uploaded image for project: 'Bug Repository'
  1. Bug Repository
  2. BUG-542

Vertical height issue: track loads in in too little space

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            The tracks display appears too small vertically with black space at the bottom.

            • Select A thaliana
            • Enter "chr1 : 12,263,000 - 12,275,000" in the search box in the upper left.
            • In the Data Access Panel,
              add BAM track: RNA-Seq > Loraine Lab > Mixed Cold > SM > Reads > Control, alignments.
            • Click the Load Data button on the lower right.
            • Select the new "RNA-Seq / Lorain Lab / Mixed Cold / SM / Reads ..." track.
            • Select the Track Adjuster tab.
            • Click the "All" button.
            • Enter "11" in the "Depth" text box.
            • Click the "OK" button.

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-681 Main Window functions

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
                  elb Eric Blossom (Inactive) created issue -
                  Hide
                  Permalink
                  lfrohman Lance Frohman (Inactive) added a comment -

                  When I try the steps, nothing is
                  loaded in the BAM track - just gray background.

                  Show
                  lfrohman Lance Frohman (Inactive) added a comment - When I try the steps, nothing is loaded in the BAM track - just gray background.
                  lfrohman Lance Frohman (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Lance Frohman [ lfrohman ] Hiral Vora [ hiralv ]
                  Hide
                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r12385.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r12385.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  Hide
                  Permalink
                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed Windows v12385

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed Windows v12385
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
                  Key IGBC-444 BUG-542
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-681 [ BUG-681 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Summary Squashed Display Vertical height issue: track loads in in too little space
                  Hide
                  Permalink
                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13790, Mac, Java 1.7.0_10

                  Instead of select the 'Track Adjuster Tab'...

                  • Select the 'Annotation' Tab
                  • Then click 'Select All'
                  • Under 'Stack Height' Panel
                    • Input '11' into the text field
                    • Click 'Apply'

                  The tracks load up taking up ALL the space in the main window viewer.

                  Show
                  richard Richard Linchangco (Inactive) added a comment - Passed V.13790, Mac, Java 1.7.0_10 Instead of select the 'Track Adjuster Tab'... Select the 'Annotation' Tab Then click 'Select All' Under 'Stack Height' Panel Input '11' into the text field Click 'Apply' The tracks load up taking up ALL the space in the main window viewer.
                  richard Richard Linchangco (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      elb Eric Blossom (Inactive)
                    • Votes:
                      0 Vote for this issue
                      Watchers:
                      0 Start watching this issue

                      Dates

                      • Created:
                        Updated:
                        Resolved: