Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Fixed
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Labels:None
Description
To reproduce:
1. Load A. thaliana
2. Load TAIR10 mRNA and check Combine tracks to show + and - tracks
3. Change the - and + strands with different stack heights such as 2 for + and 5 for -
3. Click Annotation tab
4. Select + track and observe the 'Depth' textbox on 'Track Adjuster' showing 2
5. Select - track and observe the 'Depth' does not change but still showing 2
Attachments
Issue Links
- relates to
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BUG-658 'Stack Height' function bugs
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Summary | Depth in Track Adjuster does not show correct depths for 2 tracks | Depth in Track Adjuster does not reflect correct depth for - strand |
| Description |
To reproduce: 1. Load A. thaliana 2. Load TAIR10 mRNA and check '2 track' to show 2 tracks 3. Observe that the Depth in Track Adjuster always show depth of + strand no matter - strand depth is changed and - track is selected. |
To reproduce: 1. Load A. thaliana 2. Load TAIR10 mRNA and check '2 track' to show 2 tracks 3. Observe that the Depth in Track Adjuster always show depth of + strand no matter - strand depth is changed and - track is selected. This also happens on Preferences -> track pref Additionally, the track pref doesn't refresh to reflect the existing tracks, e.g. it is still showing the deleted tracks. |
| Description |
To reproduce: 1. Load A. thaliana 2. Load TAIR10 mRNA and check '2 track' to show 2 tracks 3. Observe that the Depth in Track Adjuster always show depth of + strand no matter - strand depth is changed and - track is selected. This also happens on Preferences -> track pref Additionally, the track pref doesn't refresh to reflect the existing tracks, e.g. it is still showing the deleted tracks. |
To reproduce: 1. Load A. thaliana 2. Load TAIR10 mRNA and check '2 track' to show 2 tracks 3. Observe that the Depth in Track Adjuster always show depth of + strand no matter - strand depth is changed and - track is selected. This also happens on Preferences -> track Additionally, the Preferences -> track is out of sync with the existing tracks, e.g. it is still showing the deleted tracks. |
| Description |
To reproduce: 1. Load A. thaliana 2. Load TAIR10 mRNA and check '2 track' to show 2 tracks 3. Observe that the Depth in Track Adjuster always show depth of + strand no matter - strand depth is changed and - track is selected. This also happens on Preferences -> track Additionally, the Preferences -> track is out of sync with the existing tracks, e.g. it is still showing the deleted tracks. |
To reproduce: 1. Load A. thaliana 2. Load TAIR10 mRNA and check '2 track' to show 2 tracks 3. Observe that the Depth in Track Adjuster always show depth of + strand no matter - strand depth is changed and - track is selected. |
| Description |
To reproduce: 1. Load A. thaliana 2. Load TAIR10 mRNA and check '2 track' to show 2 tracks 3. Observe that the Depth in Track Adjuster always show depth of + strand no matter - strand depth is changed and - track is selected. |
To reproduce: 1. Load A. thaliana 2. Load TAIR10 mRNA and check '2 track' to show 2 tracks and change the 2 tracks with different depths 3. Switch to 'Track Adjuster' tab 4. Click track labels to observe the 'Depth' text field is not showing the track depths respectively. |
| Assignee | Fuquan Wang [ fwang4 ] | Katharine Kubiak [ kkubiak ] |
| Assignee | Katharine Kubiak [ kkubiak ] | Fuquan Wang [ fwang4 ] |
| Description |
To reproduce: 1. Load A. thaliana 2. Load TAIR10 mRNA and check '2 track' to show 2 tracks and change the 2 tracks with different depths 3. Switch to 'Track Adjuster' tab 4. Click track labels to observe the 'Depth' text field is not showing the track depths respectively. |
To reproduce: 1. Load A. thaliana 2. Load TAIR10 mRNA and check '2 track' to show + and - tracks 3. Change the - and + strands with different depths such as 2 for + and 5 for - 3. Click 'Track Adjuster' tab 4. Select + track and observe the 'Depth' text field on 'Track Adjuster' showing 2 5. Select - track and observe the 'Depth' does not change but still showing 2 |
| Description |
To reproduce: 1. Load A. thaliana 2. Load TAIR10 mRNA and check '2 track' to show + and - tracks 3. Change the - and + strands with different depths such as 2 for + and 5 for - 3. Click 'Track Adjuster' tab 4. Select + track and observe the 'Depth' text field on 'Track Adjuster' showing 2 5. Select - track and observe the 'Depth' does not change but still showing 2 |
To reproduce: 1. Load A. thaliana 2. Load TAIR10 mRNA and check '2 track' to show + and - tracks 3. Change the - and + strands with different depths such as 2 for + and 5 for - 3. Click 'Track Adjuster' tab 4. Select + track and observe the 'Depth' textbox on 'Track Adjuster' showing 2 5. Select - track and observe the 'Depth' does not change but still showing 2 |
| Assignee | Fuquan Wang [ fwang4 ] | Katharine Kubiak [ kkubiak ] |
| Status | Open [ 1 ] | Resolved [ 5 ] |
| Resolution | Fixed [ 1 ] |
| Status | Resolved [ 5 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] | |
| Status | Closed [ 6 ] | Reopened [ 4 ] |
| Assignee | Katharine Kubiak [ kkubiak ] |
| Status | Reopened [ 4 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] |
| Resolution | Fixed [ 1 ] | |
| Status | Closed [ 6 ] | Reopened [ 4 ] |
| Status | Reopened [ 4 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] |
| Resolution | Fixed [ 1 ] | |
| Status | Closed [ 6 ] | Reopened [ 4 ] |
| Summary | Depth in Track Adjuster does not reflect correct depth for - strand | Stack Height in Annotation tab does not reflect correct depth for - strand |
| Description |
To reproduce: 1. Load A. thaliana 2. Load TAIR10 mRNA and check '2 track' to show + and - tracks 3. Change the - and + strands with different depths such as 2 for + and 5 for - 3. Click 'Track Adjuster' tab 4. Select + track and observe the 'Depth' textbox on 'Track Adjuster' showing 2 5. Select - track and observe the 'Depth' does not change but still showing 2 |
To reproduce: 1. Load A. thaliana 2. Load TAIR10 mRNA and check Combine tracks to show + and - tracks 3. Change the - and + strands with different stack heights such as 2 for + and 5 for - 3. Click Annotation tab 4. Select + track and observe the 'Depth' textbox on 'Track Adjuster' showing 2 5. Select - track and observe the 'Depth' does not change but still showing 2 |
| Status | Reopened [ 4 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] |