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  1. Bug Repository
  2. BUG-577

Annot>Operation>single track doesn't work with multiple selections

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Won't Fix
          • Labels:
            None

            Description

            If I have 2 tracks, select all and then select the singl-track function, I would expect that the single track function is applied to every selected track. Currently, choding copy on two tracks returns one track copied and the following exception:

            Exception in thread "AWT-EventQueue-0" java.util.ConcurrentModificationException
            at java.util.AbstractList$Itr.checkForComodification(AbstractList.java:372)
            at java.util.AbstractList$Itr.next(AbstractList.java:343)
            at com.affymetrix.igb.shared.TrackTransformAction.actionPerformed(TrackTransformAction.java:20)
            at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
            at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
            at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
            at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
            at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
            at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
            at java.awt.Component.processMouseEvent(Component.java:6382)
            at javax.swing.JComponent.processMouseEvent(JComponent.java:3275)
            at java.awt.Component.processEvent(Component.java:6147)
            at java.awt.Container.processEvent(Container.java:2083)
            at java.awt.Component.dispatchEventImpl(Component.java:4744)
            at java.awt.Container.dispatchEventImpl(Container.java:2141)
            at java.awt.Component.dispatchEvent(Component.java:4572)
            at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619)
            at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280)
            at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210)
            at java.awt.Container.dispatchEventImpl(Container.java:2127)
            at java.awt.Window.dispatchEventImpl(Window.java:2489)
            at java.awt.Component.dispatchEvent(Component.java:4572)
            at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:704)
            at java.awt.EventQueue.access$400(EventQueue.java:82)
            at java.awt.EventQueue$2.run(EventQueue.java:663)
            at java.awt.EventQueue$2.run(EventQueue.java:661)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
            at java.awt.EventQueue$3.run(EventQueue.java:677)
            at java.awt.EventQueue$3.run(EventQueue.java:675)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.awt.EventQueue.dispatchEvent(EventQueue.java:674)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
            at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-659 Annotations tab

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  alyssa Alyssa Gulledge (Inactive) created issue -
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r13243.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r13243.
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  I think you went the other direction with this than I expected.... I want to be able to select multiple tracks, let's say 3 controls and 3 treated, and ask for a depth graph to be drawn for all of them at the same time. So I would select 6 tracks, go to the single-track operator, ask for 'Depth' and IGB would chug out 6 depth graphs...

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - I think you went the other direction with this than I expected.... I want to be able to select multiple tracks, let's say 3 controls and 3 treated, and ask for a depth graph to be drawn for all of them at the same time. So I would select 6 tracks, go to the single-track operator, ask for 'Depth' and IGB would chug out 6 depth graphs...
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  It exactly does what you described.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - It exactly does what you described.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Currently if you select more than 1 track, the single track option greys out and cannot be used.

                  To be fair, the multi-track option is ALSO grayed out and unusable with selection of more than 1 track...

                  v.13256

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - Currently if you select more than 1 track, the single track option greys out and cannot be used. To be fair, the multi-track option is ALSO grayed out and unusable with selection of more than 1 track... v.13256
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Seems to be working fine for me.

                  For BAM, multi track gets disable because there are no multi track operation available for it. But single track works fine.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Seems to be working fine for me. For BAM, multi track gets disable because there are no multi track operation available for it. But single track works fine.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Looks ok now.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - Looks ok now.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
                  Key IGBC-587 BUG-577
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-659 [ BUG-659 ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  This seems to be an issue again. I have a bam, an est and a refgene loaded. There is no reason if i have all selected that they should not at least offer "depth" "copy" "not" "summary" etc. While bam has added options, the basic 4 should always be available.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - This seems to be an issue again. I have a bam, an est and a refgene loaded. There is no reason if i have all selected that they should not at least offer "depth" "copy" "not" "summary" etc. While bam has added options, the basic 4 should always be available.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Won't fix for 7.0.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Won't fix for 7.0.
                  hiralv Hiral Vora (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Hiral Vora [ hiralv ]
                  Resolution Won't Fix [ 2 ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: