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  1. Bug Repository
  2. BUG-590

new link.psl to support Lucene searching and partial loading via tabix

          Details

          • Type: Task
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            Support new combined link.psl format in QL to allow Lucene searching, color configuration, partial data loading via tabix indexing.

            Ann will attach example file shortly.

              Attachments

              1. test.link.psl.gz.tbi
                71 kB
              2. test.link.psl.gz
                2.74 MB
              3. link.psl.zip
                3.31 MB

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-622 File format issues

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13940, Mac, Java 1.7.0_10

                  Tested with attached folder, link.psl.zip, and once the 'Range Box' search has executed, the 'Advanced Search' tab is opened and switched to 'Keyword' search mode.

                  'Advanced Search' defaults to the 'IDs and genes' search mode if the 'Range Box' search is not used.

                  Show
                  richard Richard Linchangco (Inactive) added a comment - Passed V.13940, Mac, Java 1.7.0_10 Tested with attached folder, link.psl.zip, and once the 'Range Box' search has executed, the 'Advanced Search' tab is opened and switched to 'Keyword' search mode. 'Advanced Search' defaults to the 'IDs and genes' search mode if the 'Range Box' search is not used.
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Changes were not merged on to the branch earlier. Now merged in r13939.

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                  hiralv Hiral Vora (Inactive) added a comment - Changes were not merged on to the branch earlier. Now merged in r13939.
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                  richard Richard Linchangco (Inactive) added a comment -

                  V.13934, Mac, Java 1.7.0_10

                  Main viewer 'Search' follows the 'Keyword' mode by default, but 'Advanced Search' still defaults to 'IDs or names', producing non-concurrent results.

                  Show
                  richard Richard Linchangco (Inactive) added a comment - V.13934, Mac, Java 1.7.0_10 Main viewer 'Search' follows the 'Keyword' mode by default, but 'Advanced Search' still defaults to 'IDs or names', producing non-concurrent results.
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                  fwang4 Fuquan Wang (Inactive) added a comment -

                  Done in 13933

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                  fwang4 Fuquan Wang (Inactive) added a comment - Done in 13933
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                  richard Richard Linchangco (Inactive) added a comment -

                  Tested by changing 'Search' drop-down menu to 'Keyword' and did work.
                  BUT I agree with Fuquan that the default 'Search' in 'Advanced Search' should be concurrent to that of the main viewer 'Search'.
                  Both 'Search' fields should default to 'Keyword' search, to produce the same results.

                  Show
                  richard Richard Linchangco (Inactive) added a comment - Tested by changing 'Search' drop-down menu to 'Keyword' and did work. BUT I agree with Fuquan that the default 'Search' in 'Advanced Search' should be concurrent to that of the main viewer 'Search'. Both 'Search' fields should default to 'Keyword' search, to produce the same results.
                  8 older comments

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      ann.loraine Ann Loraine
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                      Dates

                      • Created:
                        Updated:
                        Resolved: