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  1. Bug Repository
  2. BUG-593

opening *any* sequence file as a track causes each nucleotide to be overlayed with it's complement.

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            load up any sequence (fasta, bnib, 2bit) file as a track. See that every A has a ghost T behind it, every C has a ghoct G behind it, and vice versa (see picture)

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                Issue Links

                relates to

                Task - A task that needs to be done. BUG-622 File format issues

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  alyssa Alyssa Gulledge (Inactive) created issue -
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                  hiralv Hiral Vora (Inactive) added a comment -

                  It doesn't show me compliment.

                  Right click on tier and change the collapse to expand. Let me know if this makes any difference.

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                  hiralv Hiral Vora (Inactive) added a comment - It doesn't show me compliment. Right click on tier and change the collapse to expand. Let me know if this makes any difference.
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed dark background in r13389.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed dark background in r13389.
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Now the letters are white not black.... but the doubling effect seems to be gone

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                  alyssa Alyssa Gulledge (Inactive) added a comment - Now the letters are white not black.... but the doubling effect seems to be gone
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r13390.

                  Check codon display. Change FG and see if you can still read the letters or not.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r13390. Check codon display. Change FG and see if you can still read the letters or not.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  all good

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                  alyssa Alyssa Gulledge (Inactive) added a comment - all good
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
                  Key IGBC-699 BUG-593
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-622 [ BUG-622 ]
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                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13526, Mac, Java 1.06.0_37

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                  richard Richard Linchangco (Inactive) added a comment - Passed V.13526, Mac, Java 1.06.0_37
                  richard Richard Linchangco (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  Assignee Alyssa Gulledge [ alyssa ]
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                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13655, Mac, Java 1.06.0_37

                  See attached "Screen Shot" of what it should look like.

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                  richard Richard Linchangco (Inactive) added a comment - Passed V.13655, Mac, Java 1.06.0_37 See attached "Screen Shot" of what it should look like.
                  richard Richard Linchangco (Inactive) made changes -
                  Attachment Screen Shot 2012-12-04 at 2.34.24 PM.png [ 11764 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  Assignee Alyssa Gulledge [ alyssa ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: