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  1. Bug Repository
  2. BUG-617

display BAM inserts as tooltip

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Minor
          • Resolution: Fixed
          • Labels:
            None

            Description

            For IGB 6.8/7.0, for BAM file tracks, inserts are shown as a red
            box. Richard Bourgon requested that when the user mouses over the
            insert, a tooltip shows the insert base codes.

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-681 Main Window functions

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  lfrohman Lance Frohman (Inactive) created issue -
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                  ann.loraine Ann Loraine added a comment -

                  Could you point me toward an example file so I can see how it looks?

                  Also, what happens when user clicks the read or the red box. Does the Selection Info report insert sequence?

                  Show
                  ann.loraine Ann Loraine added a comment - Could you point me toward an example file so I can see how it looks? Also, what happens when user clicks the read or the red box. Does the Selection Info report insert sequence?
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                  hiralv Hiral Vora (Inactive) added a comment -

                  I think this is already there. Could you please test it out.

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                  hiralv Hiral Vora (Inactive) added a comment - I think this is already there. Could you please test it out.
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Attaching a representative bam file (with bai file also - download both to same location, drag in the bam).

                  Open H. sapiens to chrY. Load the entire file (it is small). You can either load sequence or not - either way insertions appear as red boxes. Tooltips already exist.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - Attaching a representative bam file (with bai file also - download both to same location, drag in the bam). Open H. sapiens to chrY. Load the entire file (it is small). You can either load sequence or not - either way insertions appear as red boxes. Tooltips already exist.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Attachment hg19Paired101bpChrYInsertions.bam [ 10570 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Attachment hg19Paired101bpChrYInsertions.bai [ 10571 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Ann Loraine [ aloraine ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Status Open [ 1 ] Closed [ 6 ]
                  Assignee Ann Loraine [ aloraine ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 6.7 [ 10040 ] Bug Repository [ 10030 ]
                  Key IGBB-154 BUG-617
                  Issue Type Task [ 3 ] Bug [ 1 ]
                  Reporter Lance Frohman [ lfrohman ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-681 [ BUG-681 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: