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  1. Bug Repository
  2. BUG-631

'cancel script' throws an error

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            test run script and cancel script

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                relates to

                Task - A task that needs to be done. BUG-650 Preferences > Shortcuts and Toolbar

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

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                  alyssa Alyssa Gulledge (Inactive) created issue -
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Here's a example script that you can use.
                  http://wiki.transvar.org/confluence/display/igbman/Scripting+and+the+IGB+command+language

                  Copy the content of 'Example Script' in a file 'script.igb'. Then use run script to run it.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Here's a example script that you can use. http://wiki.transvar.org/confluence/display/igbman/Scripting+and+the+IGB+command+language Copy the content of 'Example Script' in a file 'script.igb'. Then use run script to run it.
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Cancelling the script throws this:

                  SEVERE:
                  java.lang.InterruptedException: sleep interrupted
                  at java.lang.Thread.sleep(Native Method)
                  at com.gene.igbscript.IGBScriptEngine.doActions(IGBScriptEngine.java:194)
                  at com.gene.igbscript.IGBScriptEngine.eval(IGBScriptEngine.java:92)
                  at com.gene.igbscript.IGBScriptEngine.eval(IGBScriptEngine.java:87)
                  at com.gene.igbscript.IGBScriptEngine.eval(IGBScriptEngine.java:107)
                  at com.affymetrix.genoviz.swing.recordplayback.ScriptManager.runScript(ScriptManager.java:150)
                  at com.affymetrix.igb.action.RunScriptAction$1.doInBackground(RunScriptAction.java:131)
                  at com.affymetrix.igb.action.RunScriptAction$1.doInBackground(RunScriptAction.java:127)
                  at javax.swing.SwingWorker$1.call(SwingWorker.java:277)
                  at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
                  at java.util.concurrent.FutureTask.run(FutureTask.java:138)
                  at javax.swing.SwingWorker.run(SwingWorker.java:316)
                  at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
                  at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
                  at java.lang.Thread.run(Thread.java:680)

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                  alyssa Alyssa Gulledge (Inactive) added a comment - Cancelling the script throws this: SEVERE: java.lang.InterruptedException: sleep interrupted at java.lang.Thread.sleep(Native Method) at com.gene.igbscript.IGBScriptEngine.doActions(IGBScriptEngine.java:194) at com.gene.igbscript.IGBScriptEngine.eval(IGBScriptEngine.java:92) at com.gene.igbscript.IGBScriptEngine.eval(IGBScriptEngine.java:87) at com.gene.igbscript.IGBScriptEngine.eval(IGBScriptEngine.java:107) at com.affymetrix.genoviz.swing.recordplayback.ScriptManager.runScript(ScriptManager.java:150) at com.affymetrix.igb.action.RunScriptAction$1.doInBackground(RunScriptAction.java:131) at com.affymetrix.igb.action.RunScriptAction$1.doInBackground(RunScriptAction.java:127) at javax.swing.SwingWorker$1.call(SwingWorker.java:277) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at javax.swing.SwingWorker.run(SwingWorker.java:316) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:680)
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Summary Can you write a script I would run in IGB so I can test 'run script' and 'cancel script'? 'cancel script' throws an error
                  Issue Type Task [ 3 ] Bug [ 1 ]
                  Description Also - how do I *use* it, acces it store it, etc. test run script and cancel script
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r13599.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r13599.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
                  Key IGBC-799 BUG-631
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Attachment script.igb [ 11756 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-650 [ BUG-650 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: