Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      When adding to the toolbar from Preferences > Shortcuts
      1) 'View Genomic Sequence in Sequence Viewer...' and 'View Read Sequence in Sequence Viewer...' are NOT added to toolbar when check box is selected
      2) Appears that there are a set limit of spaces for main toolbar, when tools already in the bar are de-selected, the newly requested tools appear. However, it throws NegativeArraySizeException:

      Exception in thread "AWT-EventQueue-0" java.lang.NegativeArraySizeException
      at com.affymetrix.genoviz.datamodel.Sequence.getResidues(Sequence.java:237)
      at com.affymetrix.genoviz.widget.neoseq.WrapSequence.drawResidues(WrapSequence.java:232)
      at com.affymetrix.genoviz.widget.neoseq.WrapSequence.drawResidues(WrapSequence.java:110)
      at com.affymetrix.genoviz.widget.neoseq.WrapFontColors.draw(WrapFontColors.java:51)
      at com.affymetrix.genoviz.bioviews.Glyph.drawTraversal(Glyph.java:128)
      at com.affymetrix.genoviz.bioviews.Glyph.drawChildren(Glyph.java:169)
      at com.affymetrix.genoviz.bioviews.Glyph.drawTraversal(Glyph.java:129)
      at com.affymetrix.genoviz.widget.neoseq.WrapSequence.drawTraversal(WrapSequence.java:450)
      at com.affymetrix.genoviz.bioviews.Glyph.drawChildren(Glyph.java:169)
      at com.affymetrix.genoviz.bioviews.Glyph.drawTraversal(Glyph.java:129)
      at com.affymetrix.genoviz.glyph.RootGlyph.drawTraversal(RootGlyph.java:74)
      at com.affymetrix.genoviz.bioviews.View.normalDraw(View.java:450)
      at com.affymetrix.genoviz.bioviews.View.draw(View.java:359)
      at com.affymetrix.genoviz.bioviews.View.componentPainted(View.java:869)
      at com.affymetrix.genoviz.awt.NeoCanvas.postPaintEvent(NeoCanvas.java:72)
      at com.affymetrix.genoviz.awt.NeoCanvas.paintComponent(NeoCanvas.java:47)
      at javax.swing.JComponent.paint(Unknown Source)
      at java.awt.GraphicsCallback$PaintCallback.run(Unknown Source)
      at sun.awt.SunGraphicsCallback.runOneComponent(Unknown Source)
      at sun.awt.SunGraphicsCallback.runComponents(Unknown Source)
      at java.awt.Container.paint(Unknown Source)
      at com.affymetrix.genoviz.widget.NeoMap.paint(NeoMap.java:1235)
      at java.awt.GraphicsCallback$PaintCallback.run(Unknown Source)
      at sun.awt.SunGraphicsCallback.runOneComponent(Unknown Source)
      at sun.awt.SunGraphicsCallback.runComponents(Unknown Source)
      at java.awt.Container.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at javax.swing.JLayeredPane.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JComponent.paintToOffscreen(Unknown Source)
      at javax.swing.BufferStrategyPaintManager.paint(Unknown Source)
      at javax.swing.RepaintManager.paint(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at java.awt.GraphicsCallback$PaintCallback.run(Unknown Source)
      at sun.awt.SunGraphicsCallback.runOneComponent(Unknown Source)
      at sun.awt.SunGraphicsCallback.runComponents(Unknown Source)
      at java.awt.Container.paint(Unknown Source)
      at java.awt.Window.paint(Unknown Source)
      at javax.swing.RepaintManager.paintDirtyRegions(Unknown Source)
      at javax.swing.RepaintManager.paintDirtyRegions(Unknown Source)
      at javax.swing.RepaintManager.prePaintDirtyRegions(Unknown Source)
      at javax.swing.RepaintManager.access$700(Unknown Source)
      at javax.swing.RepaintManager$ProcessingRunnable.run(Unknown Source)
      at java.awt.event.InvocationEvent.dispatch(Unknown Source)
      at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
      at java.awt.EventQueue.access$000(Unknown Source)
      at java.awt.EventQueue$1.run(Unknown Source)
      at java.awt.EventQueue$1.run(Unknown Source)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
      at java.awt.EventQueue.dispatchEvent(Unknown Source)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
      at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
      at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
      at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
      at java.awt.EventDispatchThread.run(Unknown Source)

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            richard Richard Linchangco (Inactive) created issue -
            hiralv Hiral Vora (Inactive) made changes -
            Field Original Value New Value
            Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
            hiralv Hiral Vora (Inactive) made changes -
            Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
            hiralv Hiral Vora (Inactive) made changes -
            Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Open [ 1 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
            Key IGBC-816 BUG-668
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue relates to BUG-651 [ BUG-651 ]

              People

              • Assignee:
                Unassigned
                Reporter:
                richard Richard Linchangco (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: