Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      When adding to the toolbar from Preferences > Shortcuts
      1) 'View Genomic Sequence in Sequence Viewer...' and 'View Read Sequence in Sequence Viewer...' are NOT added to toolbar when check box is selected
      2) Appears that there are a set limit of spaces for main toolbar, when tools already in the bar are de-selected, the newly requested tools appear. However, it throws NegativeArraySizeException:

      Exception in thread "AWT-EventQueue-0" java.lang.NegativeArraySizeException
      at com.affymetrix.genoviz.datamodel.Sequence.getResidues(Sequence.java:237)
      at com.affymetrix.genoviz.widget.neoseq.WrapSequence.drawResidues(WrapSequence.java:232)
      at com.affymetrix.genoviz.widget.neoseq.WrapSequence.drawResidues(WrapSequence.java:110)
      at com.affymetrix.genoviz.widget.neoseq.WrapFontColors.draw(WrapFontColors.java:51)
      at com.affymetrix.genoviz.bioviews.Glyph.drawTraversal(Glyph.java:128)
      at com.affymetrix.genoviz.bioviews.Glyph.drawChildren(Glyph.java:169)
      at com.affymetrix.genoviz.bioviews.Glyph.drawTraversal(Glyph.java:129)
      at com.affymetrix.genoviz.widget.neoseq.WrapSequence.drawTraversal(WrapSequence.java:450)
      at com.affymetrix.genoviz.bioviews.Glyph.drawChildren(Glyph.java:169)
      at com.affymetrix.genoviz.bioviews.Glyph.drawTraversal(Glyph.java:129)
      at com.affymetrix.genoviz.glyph.RootGlyph.drawTraversal(RootGlyph.java:74)
      at com.affymetrix.genoviz.bioviews.View.normalDraw(View.java:450)
      at com.affymetrix.genoviz.bioviews.View.draw(View.java:359)
      at com.affymetrix.genoviz.bioviews.View.componentPainted(View.java:869)
      at com.affymetrix.genoviz.awt.NeoCanvas.postPaintEvent(NeoCanvas.java:72)
      at com.affymetrix.genoviz.awt.NeoCanvas.paintComponent(NeoCanvas.java:47)
      at javax.swing.JComponent.paint(Unknown Source)
      at java.awt.GraphicsCallback$PaintCallback.run(Unknown Source)
      at sun.awt.SunGraphicsCallback.runOneComponent(Unknown Source)
      at sun.awt.SunGraphicsCallback.runComponents(Unknown Source)
      at java.awt.Container.paint(Unknown Source)
      at com.affymetrix.genoviz.widget.NeoMap.paint(NeoMap.java:1235)
      at java.awt.GraphicsCallback$PaintCallback.run(Unknown Source)
      at sun.awt.SunGraphicsCallback.runOneComponent(Unknown Source)
      at sun.awt.SunGraphicsCallback.runComponents(Unknown Source)
      at java.awt.Container.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at javax.swing.JLayeredPane.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JComponent.paintToOffscreen(Unknown Source)
      at javax.swing.BufferStrategyPaintManager.paint(Unknown Source)
      at javax.swing.RepaintManager.paint(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at java.awt.GraphicsCallback$PaintCallback.run(Unknown Source)
      at sun.awt.SunGraphicsCallback.runOneComponent(Unknown Source)
      at sun.awt.SunGraphicsCallback.runComponents(Unknown Source)
      at java.awt.Container.paint(Unknown Source)
      at java.awt.Window.paint(Unknown Source)
      at javax.swing.RepaintManager.paintDirtyRegions(Unknown Source)
      at javax.swing.RepaintManager.paintDirtyRegions(Unknown Source)
      at javax.swing.RepaintManager.prePaintDirtyRegions(Unknown Source)
      at javax.swing.RepaintManager.access$700(Unknown Source)
      at javax.swing.RepaintManager$ProcessingRunnable.run(Unknown Source)
      at java.awt.event.InvocationEvent.dispatch(Unknown Source)
      at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
      at java.awt.EventQueue.access$000(Unknown Source)
      at java.awt.EventQueue$1.run(Unknown Source)
      at java.awt.EventQueue$1.run(Unknown Source)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
      at java.awt.EventQueue.dispatchEvent(Unknown Source)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
      at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
      at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
      at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
      at java.awt.EventDispatchThread.run(Unknown Source)

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              • Assignee:
                Unassigned
                Reporter:
                richard Richard Linchangco (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: