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  1. Bug Repository
  2. BUG-691

'Analyze ORFs' tracks disappear in 'Sliced View' when new data is loaded

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None
          • Environment:

            V.13782, Mac, Java 1.7.0_10

            Description

            To reproduce:

            • Open a freshly reset IGB
            • Load A_thaliana_Jun_2009
            • Zoom in on 5 or so genes
            • Under 'Available Data' in the 'Data Access' tab select 'IGB Das (DAS2)'
              • Check 'AG netaffx consensus and 'Load Data'
            • Click 'Sliced View'
            • Select a read from the affy/AG track to display in 'Sliced View'
            • Now click back to 'Data Access' and select 'ATH1-121501 netaffx consensus'
            • Click back to 'Sliced View'
              • Notice the ORF tracks above and below in the 'Sliced View' viewer
            • Click 'Load Data'

            Noticed every time a new bam or other viewable file was added and then loaded, the 'Sliced View' viewer would update with the new data BUT the still active 'Analyze ORFs' feature, although still checked, disappeared from the viewer itself.

            The 'Analyze ORFs' option has to be unchecked and then checked again in order to have the ORFs reappear. This is unexpected behavior.

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-661 Sliced View

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13788, Mac, Java 1.7.0_10

                  Tested with addition of multiple files of different file types.

                  Show
                  richard Richard Linchangco (Inactive) added a comment - Passed V.13788, Mac, Java 1.7.0_10 Tested with addition of multiple files of different file types.
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                  fwang4 Fuquan Wang (Inactive) added a comment -

                  Fixed in 13788

                  Show
                  fwang4 Fuquan Wang (Inactive) added a comment - Fixed in 13788

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      richard Richard Linchangco (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: