Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Fixed
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Labels:None
Description
Select TAOR10. Make multiple changes, including checking the '/'. Open Annot panel. Select track and click "restore default". Then, using the annot panel check '/' box. You get this error:
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at com.affymetrix.igb.view.load.JTableX.trackstylePropertyChanged(DataManagementTable.java:329)
at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47)
at com.affymetrix.igb.shared.TrackstylePropertyMonitor.actionPerformed(TrackstylePropertyMonitor.java:34)
at com.affymetrix.igb.action.ShowStrandActionA.actionPerformed(ShowStrandActionA.java:46)
at com.affymetrix.igb.shared.Actions.showOneTwoTier(Actions.java:67)
at com.affymetrix.igb.tabs.annotation.AnnotationPanelImpl.strands2TracksCheckBoxActionPerformedA(AnnotationPanelImpl.java:102)
at com.affymetrix.igb.tabs.annotation.AnnotationPanel.strands2TracksCheckBoxActionPerformed(AnnotationPanel.java:304)
at com.affymetrix.igb.tabs.annotation.AnnotationPanel.access$100(AnnotationPanel.java:10)
at com.affymetrix.igb.tabs.annotation.AnnotationPanel$2.actionPerformed(AnnotationPanel.java:65)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
at javax.swing.JToggleButton$ToggleButtonModel.setPressed(JToggleButton.java:291)
at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
at java.awt.Component.processMouseEvent(Component.java:6382)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3275)
at java.awt.Component.processEvent(Component.java:6147)
at java.awt.Container.processEvent(Container.java:2083)
at java.awt.Component.dispatchEventImpl(Component.java:4744)
at java.awt.Container.dispatchEventImpl(Container.java:2141)
at java.awt.Component.dispatchEvent(Component.java:4572)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210)
at java.awt.Container.dispatchEventImpl(Container.java:2127)
at java.awt.Window.dispatchEventImpl(Window.java:2489)
at java.awt.Component.dispatchEvent(Component.java:4572)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:704)
at java.awt.EventQueue.access$400(EventQueue.java:82)
at java.awt.EventQueue$2.run(EventQueue.java:663)
at java.awt.EventQueue$2.run(EventQueue.java:661)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
at java.awt.EventQueue$3.run(EventQueue.java:677)
at java.awt.EventQueue$3.run(EventQueue.java:675)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:674)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Attachments
1. |
Annot>Strand> +/- causes error if BAM file is unchecked. |
|
Closed | Unassigned | |
2. |
Annot>Strand> Arrow throws exception |
|
Closed | Unassigned | |
3. |
Annot>strand>color by strand throws error |
|
Closed | Unassigned |
Activity
| Field | Original Value | New Value |
|---|---|---|
| Description |
Select TAOR10. Make multiple changes, including checking the +/-. Open Annot panel. Select track and click "restore default". Then, using the annot panel check +/- box. You get this error: Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException at com.affymetrix.igb.view.load.JTableX.trackstylePropertyChanged(DataManagementTable.java:329) at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47) at com.affymetrix.igb.shared.TrackstylePropertyMonitor.actionPerformed(TrackstylePropertyMonitor.java:34) at com.affymetrix.igb.action.ShowStrandActionA.actionPerformed(ShowStrandActionA.java:46) at com.affymetrix.igb.shared.Actions.showOneTwoTier(Actions.java:67) at com.affymetrix.igb.tabs.annotation.AnnotationPanelImpl.strands2TracksCheckBoxActionPerformedA(AnnotationPanelImpl.java:102) at com.affymetrix.igb.tabs.annotation.AnnotationPanel.strands2TracksCheckBoxActionPerformed(AnnotationPanel.java:304) at com.affymetrix.igb.tabs.annotation.AnnotationPanel.access$100(AnnotationPanel.java:10) at com.affymetrix.igb.tabs.annotation.AnnotationPanel$2.actionPerformed(AnnotationPanel.java:65) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387) at javax.swing.JToggleButton$ToggleButtonModel.setPressed(JToggleButton.java:291) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236) at java.awt.Component.processMouseEvent(Component.java:6382) at javax.swing.JComponent.processMouseEvent(JComponent.java:3275) at java.awt.Component.processEvent(Component.java:6147) at java.awt.Container.processEvent(Container.java:2083) at java.awt.Component.dispatchEventImpl(Component.java:4744) at java.awt.Container.dispatchEventImpl(Container.java:2141) at java.awt.Component.dispatchEvent(Component.java:4572) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210) at java.awt.Container.dispatchEventImpl(Container.java:2127) at java.awt.Window.dispatchEventImpl(Window.java:2489) at java.awt.Component.dispatchEvent(Component.java:4572) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:704) at java.awt.EventQueue.access$400(EventQueue.java:82) at java.awt.EventQueue$2.run(EventQueue.java:663) at java.awt.EventQueue$2.run(EventQueue.java:661) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) at java.awt.EventQueue$3.run(EventQueue.java:677) at java.awt.EventQueue$3.run(EventQueue.java:675) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.awt.EventQueue.dispatchEvent(EventQueue.java:674) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) |
Select TAOR10. Make multiple changes, including checking the '+/-'. Open Annot panel. Select track and click "restore default". Then, using the annot panel check '+/-' box. You get this error: Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException at com.affymetrix.igb.view.load.JTableX.trackstylePropertyChanged(DataManagementTable.java:329) at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47) at com.affymetrix.igb.shared.TrackstylePropertyMonitor.actionPerformed(TrackstylePropertyMonitor.java:34) at com.affymetrix.igb.action.ShowStrandActionA.actionPerformed(ShowStrandActionA.java:46) at com.affymetrix.igb.shared.Actions.showOneTwoTier(Actions.java:67) at com.affymetrix.igb.tabs.annotation.AnnotationPanelImpl.strands2TracksCheckBoxActionPerformedA(AnnotationPanelImpl.java:102) at com.affymetrix.igb.tabs.annotation.AnnotationPanel.strands2TracksCheckBoxActionPerformed(AnnotationPanel.java:304) at com.affymetrix.igb.tabs.annotation.AnnotationPanel.access$100(AnnotationPanel.java:10) at com.affymetrix.igb.tabs.annotation.AnnotationPanel$2.actionPerformed(AnnotationPanel.java:65) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387) at javax.swing.JToggleButton$ToggleButtonModel.setPressed(JToggleButton.java:291) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236) at java.awt.Component.processMouseEvent(Component.java:6382) at javax.swing.JComponent.processMouseEvent(JComponent.java:3275) at java.awt.Component.processEvent(Component.java:6147) at java.awt.Container.processEvent(Container.java:2083) at java.awt.Component.dispatchEventImpl(Component.java:4744) at java.awt.Container.dispatchEventImpl(Container.java:2141) at java.awt.Component.dispatchEvent(Component.java:4572) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210) at java.awt.Container.dispatchEventImpl(Container.java:2127) at java.awt.Window.dispatchEventImpl(Window.java:2489) at java.awt.Component.dispatchEvent(Component.java:4572) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:704) at java.awt.EventQueue.access$400(EventQueue.java:82) at java.awt.EventQueue$2.run(EventQueue.java:663) at java.awt.EventQueue$2.run(EventQueue.java:661) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) at java.awt.EventQueue$3.run(EventQueue.java:677) at java.awt.EventQueue$3.run(EventQueue.java:675) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.awt.EventQueue.dispatchEvent(EventQueue.java:674) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) |
| Assignee | Hiral Vora [ hiralv ] | Fuquan Wang [ fwang4 ] |
| Assignee | Fuquan Wang [ fwang4 ] | Hiral Vora [ hiralv ] |
| Assignee | Hiral Vora [ hiralv ] | Alyssa Gulledge [ alyssa ] |
| Status | Open [ 1 ] | Resolved [ 5 ] |
| Assignee | Alyssa Gulledge [ alyssa ] | |
| Resolution | Fixed [ 1 ] |
| Status | Resolved [ 5 ] | Closed [ 6 ] |
Fixed in r13246.