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  1. Bug Repository
  2. BUG-77

Search doesn't work for BAM tracks

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      1. Load a sample BAM file in IGB. Refer https://wiki.transvar.org/confluence/display/lorainelab/read+sequences+don%27t+appear+in+sliced+view test case for loading a bam file in IGB.

      2. Zoom into any part of display where the character sequence can be seen.

      3. Select any sequence by clicking on it.

      4. Open the "Selection Info" and you would find a name and id for the selected sequence on the screen.

      5. Open the search view and search for the name taken from the selection info with "Matching IDs or names" + "genome".

      6. The search should return a result. Click on the result and see if it takes you to the corresponding sequences on screen in IGB.

      Here is a picture of a sample search.

      Testing Results
      Sept 22, 2010 - Alyssa Gulledge

      Version 6.3.1 (6884) This seems to work fine. Tried it with the 'sample' BAM file, and had no problem checking several genes.

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            Hide
            tkanapar Tarun Santosh (Inactive) added a comment -

            Passed on Mac
            "Integrated Genome Browser 7.0.4 (15382) "

            Show
            tkanapar Tarun Santosh (Inactive) added a comment - Passed on Mac "Integrated Genome Browser 7.0.4 (15382) "
            Hide
            smylapur Vineeth Mylapur (Inactive) added a comment -

            Passed 7.0 (11945) on windows.

            Show
            smylapur Vineeth Mylapur (Inactive) added a comment - Passed 7.0 (11945) on windows.
            Hide
            anuj Anuj Puram (Inactive) added a comment -

            Passed version 6.7.0 (9754) on Mac

            Show
            anuj Anuj Puram (Inactive) added a comment - Passed version 6.7.0 (9754) on Mac
            Hide
            kkubiak Katharine Kubiak (Inactive) added a comment -

            Passed version 6.7.0(9748) on Windows

            Show
            kkubiak Katharine Kubiak (Inactive) added a comment - Passed version 6.7.0(9748) on Windows

              People

              • Assignee:
                Unassigned
                Reporter:
                afshan Afshan Jalali (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: