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  1. Bug Repository
  2. BUG-78

.gff can't be searched for any of the 'selection' terms

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            Load attached .gff file. Check 'create new genome'.
            Set load mode as whole genome
            Go to search tab. Enter NC_000913.2:insC as search term.
            Click search button
            You should have an annotation listed
            Redo a search using NC_0009*
            You should get a list of annotations starting with NC_0009
            Sourceforge# 3074232

            Testing Results
            November 8, 2010 - Alyssa Gulledge

            version 6.4 (7141). This new feature appears to be working fine. Tested against several .gff files.

            Sept 27, 2010 - Alyssa Gulledge

            Apparently the issue is is that the file itself needs an ID number. The .gff needs to be created with an id and the actual file number is the searchable term, not the information shown in the selection view.

            Sept 21 2010 - Alyssa Gulledge

            Version 6.3.1 (6884) when either of these search terms are entered in the search box, IGB returns a 'no matches' result.

              Attachments

                Issue Links

                is blocked by

                Task - A task that needs to be done. BUG-648 Search bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
                  afshan Afshan Jalali (Inactive) created issue -
                  afshan Afshan Jalali (Inactive) made changes -
                  Field Original Value New Value
                  Status Open [ 1 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB6.5 [ 10010 ] Bug Repository [ 10030 ]
                  Key IGB-53 BUG-78
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Hide
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                  imnick Nick Ren (Inactive) added a comment -

                  There is no attached .gff file for testing.

                  Show
                  imnick Nick Ren (Inactive) added a comment - There is no attached .gff file for testing.
                  imnick Nick Ren (Inactive) made changes -
                  Assignee Afshan Jalali [ afshan ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Attachment File-NC_000913.gff.ftploc [ 10361 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Katharine Kubiak [ kkubiak ]
                  Hide
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Version 6.7.0 (Windows)

                  When either of these search terms are entered in the search box, IGB returns a 'no matches' result.

                  Console report:
                  "Jan 10, 2012 2:46:10 PM com.affymetrix.genometryImpl.util.ServerUtils determineLoader
                  WARNING: Couldnt find any Symloader for

                  {0}

                  format. Opening whole file.
                  Jan 10, 2012 2:46:10 PM com.affymetrix.genometryImpl.symloader.SymLoader parse
                  SEVERE: no handler for file type ftploc
                  "
                  )

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Version 6.7.0 (Windows) When either of these search terms are entered in the search box, IGB returns a 'no matches' result. Console report: "Jan 10, 2012 2:46:10 PM com.affymetrix.genometryImpl.util.ServerUtils determineLoader WARNING: Couldnt find any Symloader for {0} format. Opening whole file. Jan 10, 2012 2:46:10 PM com.affymetrix.genometryImpl.symloader.SymLoader parse SEVERE: no handler for file type ftploc " )
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Assignee Katharine Kubiak [ kkubiak ] Alyssa Gulledge [ alyssa ]
                  Hide
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                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited

                  The actual gff file from the link is now attached.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited The actual gff file from the link is now attached.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Attachment NC_000913.gff [ 10566 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  smylapur Vineeth Mylapur (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Vineeth Mylapur [ smylapur ]
                  Hide
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                  smylapur Vineeth Mylapur (Inactive) added a comment -

                  when either of these search terms are entered in the search box, IGB returns a 'no matches' result
                  Passed 7.0 (11949) on windows.

                  Show
                  smylapur Vineeth Mylapur (Inactive) added a comment - when either of these search terms are entered in the search box, IGB returns a 'no matches' result Passed 7.0 (11949) on windows.
                  smylapur Vineeth Mylapur (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Vineeth Mylapur [ smylapur ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue is blocked by BUG-648 [ BUG-648 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]
                  tkanapar Tarun Santosh (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Tarun Santosh [ tkanapar ]
                  Hide
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                  tkanapar Tarun Santosh (Inactive) added a comment -

                  Worked on
                  "Integrated Genome Browser 7.0.4 (15382) " MAC

                  Show
                  tkanapar Tarun Santosh (Inactive) added a comment - Worked on "Integrated Genome Browser 7.0.4 (15382) " MAC
                  tkanapar Tarun Santosh (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Tarun Santosh [ tkanapar ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      afshan Afshan Jalali (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: