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  1. Bug Repository
  2. BUG-842

Save selected annotations as bed detail bugs

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            Select annots, right click in track to save selected, choose bed detail:
            1) all scores are saved as "-Infinity"
            2) all exon blocks are duplicated ( a gene of 2 exons is saved as 4 exons, with the two exons exactly duplicated)

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                Issue Links

                relates to

                Task - A task that needs to be done. BUG-623 File management bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  alyssa Alyssa Gulledge (Inactive) created issue -
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                  hiralv Hiral Vora (Inactive) added a comment -

                  I couldn't reproduce it. Could you go ahead and send me the file that you used?

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                  hiralv Hiral Vora (Inactive) added a comment - I couldn't reproduce it. Could you go ahead and send me the file that you used?
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  do it on a gff file

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                  alyssa Alyssa Gulledge (Inactive) added a comment - do it on a gff file
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  I tried it on GFF, but still cannot reproduce it.

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                  hiralv Hiral Vora (Inactive) added a comment - I tried it on GFF, but still cannot reproduce it.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Attachment ChLG2_official_gene.gff3.zip [ 12088 ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  I see it on some of the gff/gtf/glimmer/cufflinks/gff3/etc. files. Often from -strand has the "-infinity". The attached file gives the doubling and the -infinity

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                  alyssa Alyssa Gulledge (Inactive) added a comment - I see it on some of the gff/gtf/glimmer/cufflinks/gff3/etc. files. Often from -strand has the "-infinity". The attached file gives the doubling and the -infinity
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r14982-14983.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r14982-14983.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 7.1 [ 10240 ] Bug Repository [ 10030 ]
                  Key IGBD-263 BUG-842
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-623 [ BUG-623 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Tarun Santosh [ tkanapar ]
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                  tkanapar Tarun Santosh (Inactive) added a comment -

                  Passed in Mac IGB 8.0.0 (15404)

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                  tkanapar Tarun Santosh (Inactive) added a comment - Passed in Mac IGB 8.0.0 (15404)
                  tkanapar Tarun Santosh (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Tarun Santosh [ tkanapar ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: