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  1. Bug Repository
  2. BUG-88

Selectable leftmost object in depth graph can be made to show genomic sequence

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None
          • Environment:

            OS X: 10.6
            Java: "1.6.0_24"
            IGB: Svn version 7791

            Description

            Steps to reproduce:
            Load Arabidopsis thaliana version 'A_thaliana_Jun_2009'.
            Right click on a track (+ or ) and chose "Make Annotation Depth Graph">"Tair10 mRNA (+/-)"

            The generated depth graph has an object at the left most portion of the view. It is selectable and if the user clicks "Show genomic sequence" the UI will freeze. Eventually, the sequence viewer will show up with nulls as the titles.

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                is blocked by

                Task - A task that needs to be done. BUG-639 IGB generated graphs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  smylapur Vineeth Mylapur (Inactive) added a comment -

                  Passed 7.0 v(11908) Windows

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                  smylapur Vineeth Mylapur (Inactive) added a comment - Passed 7.0 v(11908) Windows
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  originally reported by Adam Baxter

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                  alyssa Alyssa Gulledge (Inactive) added a comment - originally reported by Adam Baxter
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                  anuj Anuj Puram (Inactive) added a comment -

                  Passed 6.7.0 (9891) on Mac

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                  anuj Anuj Puram (Inactive) added a comment - Passed 6.7.0 (9891) on Mac
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed v9871 Windows

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                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9871 Windows
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                  vbishnoi vbishnoi added a comment -

                  This has been fixed now.
                  The option has been removed from the menu.

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                  vbishnoi vbishnoi added a comment - This has been fixed now. The option has been removed from the menu.
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  The same 'object' occurs in the mismatch graph. Right clicking the object opens a menu offering you to 'center at zoom stripe' 'select parent' and 'View in sequence viewer'. Either the object needs to be removed, or the right click menu needs to be disabled AND the 'view seq...' needs to be disabled in the VIEW dropdown menu

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - The same 'object' occurs in the mismatch graph. Right clicking the object opens a menu offering you to 'center at zoom stripe' 'select parent' and 'View in sequence viewer'. Either the object needs to be removed, or the right click menu needs to be disabled AND the 'view seq...' needs to be disabled in the VIEW dropdown menu

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: