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  1. Bug Repository
  2. BUG-89

Search function returns a double result for each individual gene model within the data set

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      1- select ANY species, any genome version
      2- in search view, disable "also search remotely" box
      3- search for any full or partial gene name
      4- Currently, it returns records twice for each gene ID.

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            afshan Afshan Jalali (Inactive) created issue -
            alyssa Alyssa Gulledge (Inactive) made changes -
            Field Original Value New Value
            Summary Search returns a double result Search function returns a double result for each individual gene model within the data set
            Assignee vikram bishnoi [ vbishnoi ] Hiral Vora [ hiralv ]
            Description 1- select "Mus musculus" for example for gen
            2- in search view , disable "also search remotely" box
            3- search for a gene name

            It returns records twice for each gene ID.

            I tried for several other spieces.
            1- select ANY species, any genome version
            2- in search view, disable "also search remotely" box
            3- search for any full or partial gene name
            4- Currently, it returns records twice for each gene ID.
            Hide
            alyssa Alyssa Gulledge (Inactive) added a comment -

            After poking around, it seems like this occurred in mouse and human but not plant.

            To reproduce, load A thal Tair10. Search for at1g07350. Click item in list. Then change to homo sapiens, click off the server search, then search term eg or ex. The list has the same annotation listed twice but upon clicking the item in the list, you get two slightly different selections in the view. The same thing will occur in mouse, but NOT plant.

            Could it be searching both the reference sequences AND the cytoband file, thus returning 2 results?

            Show
            alyssa Alyssa Gulledge (Inactive) added a comment - After poking around, it seems like this occurred in mouse and human but not plant. To reproduce, load A thal Tair10. Search for at1g07350. Click item in list. Then change to homo sapiens, click off the server search, then search term eg or ex. The list has the same annotation listed twice but upon clicking the item in the list, you get two slightly different selections in the view. The same thing will occur in mouse, but NOT plant. Could it be searching both the reference sequences AND the cytoband file, thus returning 2 results?
            hiralv Hiral Vora (Inactive) made changes -
            Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
            Hide
            alyssa Alyssa Gulledge (Inactive) added a comment -

            OK - so this occurs in ANY species genome - even plant.

            The first species/genome searched will always be fine and return single results. However, the SECOND, third, etc genome/species will return doubles results - so it is not the cytobands...

            If you click the first time the feature is listed vs the second time, you will get a different image in the window, with a slightly smaller 'hit box'?

            Show
            alyssa Alyssa Gulledge (Inactive) added a comment - OK - so this occurs in ANY species genome - even plant. The first species/genome searched will always be fine and return single results. However, the SECOND, third, etc genome/species will return doubles results - so it is not the cytobands... If you click the first time the feature is listed vs the second time, you will get a different image in the window, with a slightly smaller 'hit box'?
            Hide
            hiralv Hiral Vora (Inactive) added a comment -

            I am having hard time reproducing it. Can you give me exact species, steps and search terms ?

            Show
            hiralv Hiral Vora (Inactive) added a comment - I am having hard time reproducing it. Can you give me exact species, steps and search terms ?
            hiralv Hiral Vora (Inactive) made changes -
            Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
            Hide
            alyssa Alyssa Gulledge (Inactive) added a comment -

            1. open A. Thaliana
            2. go to search, (uncheck the server button)
            3. search '7350'
            4. go back to data access, chose homo sapiens, latest genome
            5. go to search, uncheck the server box
            6. search 'ex'

            This can be repeated by opening up one of the species/genomes that 'doubles', search for anything, get a search list returned with single listings. THEN switch to another genome that 'doubles', and search for anything - you get doubled returns.

            Genomes that double up (that I have found so far) seem to all be 'autoload' for ref sequence - but NOT all autoloads! Currently, I have identified mouse, human, A thal, rat, dog, chicken, cow, corn.... working on the full list - I will updat in the comments as i find more

            Show
            alyssa Alyssa Gulledge (Inactive) added a comment - 1. open A. Thaliana 2. go to search, (uncheck the server button) 3. search '7350' 4. go back to data access, chose homo sapiens, latest genome 5. go to search, uncheck the server box 6. search 'ex' This can be repeated by opening up one of the species/genomes that 'doubles', search for anything, get a search list returned with single listings. THEN switch to another genome that 'doubles', and search for anything - you get doubled returns. Genomes that double up (that I have found so far) seem to all be 'autoload' for ref sequence - but NOT all autoloads! Currently, I have identified mouse, human, A thal, rat, dog, chicken, cow, corn.... working on the full list - I will updat in the comments as i find more
            alyssa Alyssa Gulledge (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
            Hide
            hiralv Hiral Vora (Inactive) added a comment -

            Fixed.

            Show
            hiralv Hiral Vora (Inactive) added a comment - Fixed.
            hiralv Hiral Vora (Inactive) made changes -
            Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Open [ 1 ] Resolved [ 5 ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Project IGB6.5 [ 10010 ] Bug Repository [ 10030 ]
            Key IGB-120 BUG-89
            alyssa Alyssa Gulledge (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            imnick Nick Ren (Inactive) made changes -
            Assignee Alyssa Gulledge [ alyssa ]
            imnick Nick Ren (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Resolution Fixed [ 1 ]
            imnick Nick Ren (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Katharine Kubiak [ kkubiak ]
            Hide
            kkubiak Katharine Kubiak (Inactive) added a comment -

            Passed v9770 Windows

            Show
            kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9770 Windows
            kkubiak Katharine Kubiak (Inactive) made changes -
            Assignee Katharine Kubiak [ kkubiak ] Anuj Puram [ anuj ]
            Hide
            anuj Anuj Puram (Inactive) added a comment -

            Passed version 6.7.0(9791) on Mac

            Show
            anuj Anuj Puram (Inactive) added a comment - Passed version 6.7.0(9791) on Mac
            anuj Anuj Puram (Inactive) made changes -
            Assignee Anuj Puram [ anuj ] Alyssa Gulledge [ alyssa ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Alyssa Gulledge [ alyssa ]
            Resolution Fixed [ 1 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Resolved [ 5 ] Closed [ 6 ]
            smylapur Vineeth Mylapur (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Vineeth Mylapur [ smylapur ]
            Hide
            smylapur Vineeth Mylapur (Inactive) added a comment -

            Passed 7.0 v(11908) Windows

            Show
            smylapur Vineeth Mylapur (Inactive) added a comment - Passed 7.0 v(11908) Windows
            smylapur Vineeth Mylapur (Inactive) made changes -
            Status Reopened [ 4 ] Resolved [ 5 ]
            Assignee Vineeth Mylapur [ smylapur ]
            Resolution Fixed [ 1 ]
            richard Richard Linchangco (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Resolved [ 5 ] Reopened [ 4 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Link This issue is blocked by BUG-648 [ BUG-648 ]
            alyssa Alyssa Gulledge (Inactive) made changes -
            Status Reopened [ 4 ] Closed [ 6 ]
            Resolution Fixed [ 1 ]
            tkanapar Tarun Santosh (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Tarun Santosh [ tkanapar ]
            Hide
            tkanapar Tarun Santosh (Inactive) added a comment -

            Passed (7.0.4) 15384(Mac)

            Show
            tkanapar Tarun Santosh (Inactive) added a comment - Passed (7.0.4) 15384(Mac)
            tkanapar Tarun Santosh (Inactive) made changes -
            Status Reopened [ 4 ] Closed [ 6 ]
            Resolution Fixed [ 1 ]
            hiralv Hiral Vora (Inactive) made changes -
            Resolution Fixed [ 1 ]
            Status Closed [ 6 ] Reopened [ 4 ]
            Assignee Tarun Santosh [ tkanapar ]
            hiralv Hiral Vora (Inactive) made changes -
            Status Reopened [ 4 ] Closed [ 6 ]
            Resolution Fixed [ 1 ]

              People

              • Assignee:
                Unassigned
                Reporter:
                afshan Afshan Jalali (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: